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Table 3 Correlation between the pair-wise estimates of LD obtained from different sample sizes against a reference sample of 1000 animals.

From: Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

   Correlation between the estimates from two different samples
Sample 1 Sample 2 D' r 2 MAF
1000 25 0.33 (0.27–0.39) 0.70 (0.57–0.77) 0.90 (0.82–0.94)
1000 50 0.48 (0.40–0.58) 0.85 (0.79–0.92) 0.96 (0.94–0.97)
1000 75 0.56 (0.51–0.64) 0.91 (0.88–0.95) 0.97 (0.94–0.98)
1000 100 0.63 (0.55–0.73) 0.94 (0.91–0.96) 0.98 (0.97–0.99)
1000 150 0.72 (0.66–0.77) 0.96 (0.94–0.98) 0.98 (0.97–0.99)
1000 200 0.77 (0.71–0.83) 0.98 (0.96–0.99) 0.99 (0.98–0.99)
1000 300 0.85 (0.80–0.89) 0.99 (0.98–0.99) 0.99 (0.99–1.00)
1000 400 0.89 (0.86–0.92) 0.99 (0.99–1.00) 1.00 (0.99–1.00)
1000 500 0.93 (0.90–0.95) 0.99 (0.99–1.00) 1.00 (1.00–1.00)
1000 1546 0.95 (0.93–0.96) 0.99 (0.99–1.00) 1.00 (1.00–1.00)
  1. The values in the parentheses are the range of correlation coefficient obtained from analysis of 29 individual autosomes.