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Table 3 Correlation between the pair-wise estimates of LD obtained from different sample sizes against a reference sample of 1000 animals.

From: Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

  

Correlation between the estimates from two different samples

Sample 1

Sample 2

D'

r 2

MAF

1000

25

0.33 (0.27–0.39)

0.70 (0.57–0.77)

0.90 (0.82–0.94)

1000

50

0.48 (0.40–0.58)

0.85 (0.79–0.92)

0.96 (0.94–0.97)

1000

75

0.56 (0.51–0.64)

0.91 (0.88–0.95)

0.97 (0.94–0.98)

1000

100

0.63 (0.55–0.73)

0.94 (0.91–0.96)

0.98 (0.97–0.99)

1000

150

0.72 (0.66–0.77)

0.96 (0.94–0.98)

0.98 (0.97–0.99)

1000

200

0.77 (0.71–0.83)

0.98 (0.96–0.99)

0.99 (0.98–0.99)

1000

300

0.85 (0.80–0.89)

0.99 (0.98–0.99)

0.99 (0.99–1.00)

1000

400

0.89 (0.86–0.92)

0.99 (0.99–1.00)

1.00 (0.99–1.00)

1000

500

0.93 (0.90–0.95)

0.99 (0.99–1.00)

1.00 (1.00–1.00)

1000

1546

0.95 (0.93–0.96)

0.99 (0.99–1.00)

1.00 (1.00–1.00)

  1. The values in the parentheses are the range of correlation coefficient obtained from analysis of 29 individual autosomes.