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Table 5 Structural properties of the described SLS families in relation to genomic location.

From: Systematic identification of stem-loop containing sequence families in bacterial genomes

 

Sec. Struct. +

Sec. Struct. -

Total

Genomic location

SLS +

SLS -

SLS +

SLS -

 

Genic

5

4

4

17

30

Border spanning

7

0

0

0

7

Intergenic

25

6

1

9

41

Others

9

1

1

3

14

Total

46

11

6

29

92

  1. Columns under "Sec. Struct. +/-" report the number of families, characterized by the presence or absence of a conserved secondary structure predicted by RNAz; the labels "SLS +/-" indicate the presence or absence of aligned SLSs; "Total" means the sum of rows or columns.
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BMC Genomics

ISSN: 1471-2164

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