From: Comparative analysis of sequence features involved in the recognition of tandem splice sites
A) | Â | Â | Â | Â |
---|---|---|---|---|
Features of A5Es | P Δ(major-form) | d Δ(minor-form) | D Δ(major-form) | p Δ(minor-form) |
Number of occurrences | 872 | 598 | ||
   in-frame (major-form) | 410 (47%) | 257 (43%) | ||
   out-of-frame (minor-form) | 462 (53%) | 341 (57%) | ||
Mean extension length (nucleotides) | 82 | 119 | ||
Mean core length (nucleotides) | 189 | 107 | 126 | 245 |
Transcript coverage | 3,603/19,709 | 324/924 | 2,186/13,126 | 330/556 |
Average MAXENT score | 7.5 | -0.5 | 6.8 | 4.6 |
B) | Â | Â | Â | Â |
Features of A5EΔ4 exons | P Δ4 (major-form) | d Δ4 (minor-form) | D Δ4 (major-form) | p Δ4 (minor-form) |
Number of occurrences | 44 | 118 | ||
Extension length (nucleotides) | 4 | 4 | ||
Mean core length (nucleotides) | 126 | 122 | 119 | 123 |
Transcript coverage | 159/619 | 20/46 | 531/7,000 | 15/144 |
Average MAXENT score | 7.5 | 2.8 | 7.9 | -3.9 |