Table 6 Genes and enzymes of glucose and energy metabolism
From: Genomics of an extreme psychrophile, Psychromonas ingrahamii
Pathway | Gene | Enzyme |
|---|---|---|
Glycolysis | Â | Â |
| Â | 591 | 6-phosphofructokinase |
| Â | 1316 | 6-phosphofructokinase |
| Â | 669 | enolase |
| Â | 3617 | fructose-1,6-bisphosphatase, class II |
| Â | 2682 | fructose-bisphosphate aldolase |
| Â | 372 | fructose-bisphosphate aldolase, class II |
| Â | 2359 | glucokinase |
| Â | 2382 | glucokinase |
| Â | 2932 | glucokinase, thermoresistant |
| Â | 324 | glucose-6-phosphate isomerase |
| Â | 2004 | glyceraldehyde-3-phosphate dehydrogenase, |
| Â | 2367 | glyceraldehyde-3-phosphate dehydrogenase, |
| Â | 3636 | glyceraldehyde-3-phosphate dehydrogenase, |
| Â | 879 | phosphoglucomutase |
| Â | 769 | phosphoglucomutase |
| Â | 371 | phosphoglycerate kinase |
| Â | 249 | phosphoglycerate mutase |
| Â | 2320 | phosphoglycerate mutase |
| Â | 3211 | phosphoglycerate mutase, cofactor-independent |
| Â | 2361 | pyruvate kinase |
| Â | 2879 | pyruvate kinase |
| Â | 2199 | triose-phosphate isomerase |
Metabolic connections | Â | Â |
| Â | 3617 | fructose-1,6-bisphosphatase, class II |
| Â | 93 | phosphoenolpyruvate carboxykinase |
| Â | 537 | malic enzyme |
| Â | 304 | isocitrate lyase and phosphorylmutase |
| Â | 303 | malate synthase |
Pentose pathway | Â | Â |
| Â | 2752 | 6-phosphogluconate dehydrogenase, decarboxylating |
| Â | 2937 | 6-phosphogluconate dehydrogenase, decarboxylating |
| Â | 2753 | 6-phosphogluconolactonase |
| Â | 167 | ribulose-phosphate 3-epimerase |
| Â | 2754 | glucose-6-phosphate 1-dehydrogenase |
| Â | 3554 | ribose 5-phosphate isomerase |
| Â | 601 | ribose 5-phosphate isomerase |
| Â | 2054 | transaldolase |
| Â | 86 | transaldolase B |
| Â | 339 | transketolase |
| Â | 3086 | glucose dehydrogenase |
| Â | 2936 | gluconate kinase |
Pyruvate dehydrogenase | Â | Â |
| Â | 2782 | pyruvate dehydrogenase complex, E1 beta subunit |
| Â | 3602 | pyruvate dehydrogenase complex, E1 beta subunit |
| Â | 3601 | pyruvate dehydrogenase complex, E1 acetate transfer subunit |
| Â | 3603 | pyruvate dehydrogenase complex, E2 subunit |
| Â | 2779 | dihydrolipoamide dehydrogenase E3 subunit |
| Â | 2780 | dihydrolipoamide dehydrogenase E3 subunit |
| Â | 2925 | dihydrolipoamide dehydrogenase E3 subunit |
Tricarboxylic acid cycle | Â | Â |
| Â | 2927 | 2-oxo-acid dehydrogenase E1 subunit |
| Â | 2252 | 2-oxoglutarate dehydrogenase, E1 subunit |
| Â | 2926 | 2-oxoglutarate dehydrogenase E2 subunit |
| Â | 2251 | 2-oxoglutarate dehydrogenase, E2 subunit |
| Â | 2899 | aconitate hydratase |
| Â | 2120 | aconitate hydratase 1 |
| Â | 800 | adenylyl-sulfate kinase |
| Â | 2257 | citrate synthase I |
| Â | 2617 | citrate synthase I |
| Â | 1738 | fumarate hydratase |
| Â | 1977 | fumarate hydratase |
| Â | 983 | isocitrate dehydrogenase, NADP-dependent |
| Â | 297 | malate dehydrogenase, NAD-dependent |
| Â | 3376 | oxaloacetate decarboxylase alpha subunit |
| Â | 3375 | oxaloacetate decarboxylase, beta subunit |
| Â | 2253 | succinate dehydrogenase catalytic subunit SdhB |
| Â | 2254 | succinate dehydrogenase, flavoprotein subunit SdhA |
| Â | 2256 | succinate dehydrogenase, cytochrome b-binding subunit sdhC |
| Â | 2255 | succinate dehydrogenase, cytochrome b-binding subunit sdhD |
| Â | 2249 | succinyl-CoA synthetase, alpha subunit |
| Â | 2250 | succinyl-CoA synthetase, beta subunit |
Anaerobic respiration | Â | Â |
| Â | 3279 | fumarate reductase iron-sulfur subunit |
| Â | 3281 | fumarate reductase, D subunit |
| Â | 3278 | fumarate reductase, flavoprotein subunit |
| Â | 3280 | fumarate reductase, subunit C |
| Â | 2175 | nitrate reductase accessory periplasmic protein NapD |
| Â | 2172 | nitrate reductase periplasmic cytochrome c-type protein NapC |
| Â | 2173 | nitrate reductase periplasmic cytochrome c-type subunit NapB |
| Â | 2174 | nitrate reductase, periplasmic large subunit |
| Â | 1024 | nitrite reductase [NAD(P)H], large subunit |
| Â | 1023 | nitrite reductase [NAD(P)H], small subunit |
| Â | 3435 | sulfite reductase (NADPH) hemoprotein, beta-component |
| Â | 3434 | sulfite reductase [NADPH] flavoprotein, alpha chain |
| Â | 3436 | phosphoadenosine phosphosulfate reductase (PAPS reductase) |
Oxidoreductases of unknown substrate | Â | Â |
| Â | 45 | short-chain dehydrogenase/reductase SDR |
| Â | 223 | short-chain dehydrogenase/reductase SDR |
| Â | 951 | short-chain dehydrogenase/reductase SDR |
| Â | 989 | short-chain dehydrogenase/reductase SDR |
| Â | 1000 | short-chain dehydrogenase/reductase SDR |
| Â | 1973 | short-chain dehydrogenase/reductase SDR |
| Â | 2106 | short-chain dehydrogenase/reductase SDR |
| Â | 2109 | short-chain dehydrogenase/reductase SDR |
| Â | 2778 | short-chain dehydrogenase/reductase SDR |
| Â | 3154 | short-chain dehydrogenase/reductase SDR |
| Â | 272 | oxidoreductase FAD/NAD(P)-binding domain protein |
| Â | 3187 | oxidoreductase FAD/NAD(P)-binding domain protein |
| Â | 2122 | oxidoreductase alpha (molybdopterin) subunit |
| Â | 1244 | oxidoreductase domain protein |
| Â | 1809 | oxidoreductase domain protein |
| Â | 2666 | oxidoreductase domain protein |
| Â | 3535 | oxidoreductase domain protein |
| Â | 576 | oxidoreductase, molybdopterin binding |
Fermentation indications | Â | Â |
| Â | 91 | fermentative D-lactate dehydrogenase |
| Â | 2123 | formate dehydrogenase, subunit FdhD |
| Â | 1217 | hydrogenase, NADP-reducing subunit C |
| Â | Â | many alcohol dehydrogenases |