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Table 3 Hemiselmis andersenii mtDNA codon usage table.

From: Complete Sequence and Analysis of the Mitochondrial Genome of Hemiselmis andersenii CCMP644 (Cryptophyceae)

  

Second Position of Codon

  
  

U

C

A

G

  

First Position of Codon

U

UUU [F] 608

UCU [S] 123

UAU [Y] 312

UGU [C] 123

U

Third Position of Codon

  

UUC [F] 126•

UCC [S] 18

UAC [Y] 69•

UGC [C] 20•

C

 
  

UUA [L] 688•

UCA [S] 205•

UAA [stop] 32

UGA [stop] 2

A

 
  

UUG [L] 163

UCG [S] 57

UAG [stop] 3

UGG [W] 120•

G

 
 

C

CUU [L] 179

CCU [P] 139

CAU [H] 140

CGU [R] 83

U

 
  

CUC [L] 38•

CCC [P] 18

CAC [H] 30•

CGC [R] 17•

C

 
  

CUA [L] 88•

CCA [P] 115•

CAA [Q] 217•

CGA [R] 95•

A

 
  

CUG [L] 20

CCG [P] 28

CAG [Q] 42

CGG [R] 32

G

 
 

A

AUU [I] 579

ACU [T] 162

AAU [N] 307

AGU [S] 183

U

 
  

AUC [I] 85•

ACC [T] 24

AAC [N] 95•

AGC [S] 29•

C

 
  

AUA [I] 207•

ACA [T] 242•

AAA [K] 517• †

AGA [R] 110•

A

 
  

AUG [M] 233••

ACG [T] 54

AAG [K] 75

AGG [R] 15

G

 
 

G

GUU [V] 311

GCU [A] 186

GAU [D] 221

GGU [G] 299

U

 
  

GUC [V] 38

GCC [A] 35

GAC [D] 39•

GGC [G] 41•

C

 
  

GUA [V] 204•

GCA [A] 225•

GAA [E] 283•

GGA [G] 131•

A

 
  

GUG [V] 62

GCG [A] 64

GAG [E] 65

GGG [G] 83

G

 
  1. The frequency of each codon is shown and dots indicate the presence of a corresponding tRNA gene in the mtDNA. †: 'trnK(uuu)' identified in the genome may be a pseudogene (see discussion).
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BMC Genomics

ISSN: 1471-2164

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