From: Biocomputational prediction of small non-coding RNAs in Streptomyces
ID# | Exp.† | Length | Strand* | Genomic coordinates | E-value | 5' flanking gene distance | 5' flanking gene termination& | RNAz probability @ |
---|---|---|---|---|---|---|---|---|
4 | ++ | 78 | ← ⇒ ← | 3082276..3082354 | 7 × 10-25 | 267 | 1 | |
17 | -0 | 161 | ← ⇒ ← | 6702716..6702877 | 4 × 10-53 | 131 | 1 | |
36 | -0 | 72 | ← ⇒ → | 7719646..7719718 | 2 × 10-30 | 274 | 0.98 | |
73 | ++ | 53 | → ⇒ ← | 6800040..6800093 | 2 × 10-22 | 122 | 0.91 | |
84 | -0 | 32 | ← ⇒ → | 4153086..4153118 | 2 × 10-27 | 111 | 0.59 | |
95 | +- | 312 | ← ⇒ → | 6412268..6412579 | 3 × 10-127 | 10 | 0.7 | |
96 | -0 | 92 | → ⇐ → | 6393104..6393196 | 3 × 10-77 | 0 | - | |
114, 5S RNA | +0 | 132 | ← ⇐ ← | 1916439..1916571 | 9 × 10-47 | 0 | 1 | |
115 | +- | 246 | → ⇒ → | 4530291..4530536 | 3 × 10-118 | 275 | C-rich, 4530261..4530290 | 0.99 |
116 | -0 | 122 | → ⇐ → | 6266683..6266805 | 5 × 10-77 | 0 | 1 | |
126 | -0 | 118 | → ⇒ → | 6144157..6144275 | 7 × 10-60 | 32 | C-rich, 6143954..6144005 | 1 |
146 | +- | 80 | → ⇐ → | 6005563..6005643 | 6 × 10-31 | 0 | - | |
155 | ++ | 149 | ← ⇒ → | 5922111..5922259 | 4 × 10-57 | 11 | 0.96 | |
156 | +- | 93 | → ⇐ → | 5912196..5912289 | 2 × 10-32 | 0 | 0.94 | |
200 | +- | 150 | → ⇐ → | 5647597..5647746 | 4 × 10-127 | 1 | 1 | |
222 | ++ | 84 | ← ⇐ ← | 5400596..5400680 | 4 × 10-47 | 25 | ? | 0.9 |
234 | -0 | 94 | ← ⇐ → | 6033508..6033602 | 4 × 10-67 | 164 | - | |
261, tRNA ala | +0 | 85 | ← ⇐ ← | 3481828..3481913 | 6 × 10-26 | 0 | C-rich, 3482039..3482068 | 0.99 |
270 | ++ | 118 | ← ⇒ ← | 3506180..3506297 | 1 × 10-16 | 1 | 0.58 | |
274 | +- | 189 | ← ⇒ ← | 5040566..5040754 | 1 × 10-50 | 60 | 1 | |
329, 4.5S | ++ | 155 | ← ⇒ → | 4456953..4457107 | 2 × 10-42 | 0 | 0.84 | |
341 | ++ | 96 | → ⇐ ← | 4375750..4375846 | 4 × 10-40 | 0 | C-rich, 4375909..4375880 | 1 |
390 | ++ | 203 | ← ⇐ → | 3933499..3933702 | 8 × 10-74 | 0 | 1 | |
389 | ++ | 184 | → ⇐ → | 3934660..3934844 | 3 × 10-65 | 0 | 1 | |
413.1 | ++ | 338 | ← ⇒ → | 3690627..3690965 | 3 × 10-120 | 412 | 1 | |
413.2 | -0 | 302 | ← ⇒ → | 3690627..3691287 | 3 × 10-120 | 90 | 1 | |
445 | -0 | 192 | → ⇒ → | 5076164..5076355 | 7 × 10-67 | 29 | Rho-ind., 5076138..5076163 | 0.97 |
458 | -0 | 210 | ← ⇐ → | 5179518..5179728 | 6 × 10-107 | 0 | 0.67 | |
462 | -0 | 367 | ← ⇐ → | 3321271..3321638 | 7 × 10-156 | 63 | 0.99 | |
470, tmRNA | ++ | 512 | → ⇐ ← | 3226537..3227049 | 2 × 10-130 | 1 | C-rich, 3227036..3227062 | 1 |
472 | ++ | 219 | → ⇐ ← | 3208599..3208817 | 6 × 10-51 | 69 | Rho-ind., 3208818..3208856 | 1 |
482, tRNA lys | +0 | 72 | → ⇐ ← | 3079118..3079190 | 3 × 10-50 | 0 | Rho-ind., 3079251..3079289 | 1 |
493 | -0 | 48 | ← ⇒ ← | 2984116..2984164 | 4 × 10-65 | 46 | 0.97 | |
528 | +- | 170 | ← ⇒ ← | 2646934..2647104 | 3 × 10-27 | 1 | 0.62 | |
624 | +- | 159 | ← ⇒ ← | 1765024..1765183 | 3 × 10-21 | 2 | 0.95 | |
640, tRNA gly | +0 | 83 | ← ⇐ → | 4469872..4469955 | 2 × 10-27 | 0 | 1 | |
676 | +- | 308 | ← ⇒ → | 1457688..1457996 | 1 × 10-98 | 23 | 1 |