From: How Athila retrotransposons survive in the Arabidopsis genome
 |  | Locations of the ORFs |  |  | |||
---|---|---|---|---|---|---|---|
FAMILY | Acc. No. | ORF1 (gag) | ORF2 (pol) | ORF2 (pol) | ORF3 (env) | Locations of the LTRs | Insertion range‡ (Myr) |
 |  |  | RT | Integrase |  |  |  |
I | AB005248.1 | 26036–27931 | 28901–29497 | 30719–31504 | 32343–33455 | 24125–25715/34256–35848 | 0.07 ± 0.03 – 1.60 ± 0.33 |
II | AC007112.6 | 13686–15547 | X | X | 17353–18318 | 11871–13507/20699–22334 | 0.33 ± 0.10 – 1.63 ± 0.20 |
IIIa | AC007268.5 | 54217–56048 | X | X | 58170–59432 | 52396–53654/61662–62920 | 0.80 ± 0.13 – 2.07 ± 0.33 |
IIIb | AC006419.4a | 16642–18676 | 19664–20167 | 21481–22261 | 22764–24068 | 14874–16490/25936–27580 | 1.77 ± 0.20 – 2.07 ± 0.23 |
IVa | AC006419.4b | 77199–79245 | X | X | * | 75761–77058/82966–84163 | 1.00 ± 0.13 – 2.40 ± 0.23 |
IVb | AC007209.6 | 20563–18531 | 17510–16914 | 15695–14953 | 13758–11905 | 22465–20708/10282–8571 | 0.17 ± 0.07 – 1.07 ± 0.13 |
IVc | AC007125.1 | 8267–10612 | X | X | 12350–14105 | 6319–8119/15919–17719 | 0.20 ± 0.10 – 1.63 ± 0.20 |
Va | X81801.1 | 1732–4539 | X | X | 5248–7332 | 1–1539/8954–10505 | 0.07 ± 0.03 – 1.73 ± 0.23 |
Vb | AF262040.1 | 39443–41436 | X | X | * | 38797–39257/45690–46143 | 0.80 ± 0.13 – 2.33 ± 0.33 |
VI | AC069329.6 | 42891–40537 | X | X | 38906–36963 | 44864–43063/35330–33522 | 0.20 ± 0.10 – 1.83 ± 0.23 |
VII | AB062087.1 | 46573–44021 | 43484–42995 | 41773–40991 | * | 48228–46745/38467–37031 | 0.17 ± 0.07 – 0.93 ± 0.13 |