|
Single genes
|
|
CPSF160/Yhh1
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Binds to AAUAAA
|
At5g51660 (CPSF160)
|
Score = 346 bits (888), Expect = 6e-93
|
|
CPSF100/Ydh1
|
Unknown
|
At5g23880 (CPSF100, ESP5)
|
Score = 505 bits (1301), Expect = 4e-141,
|
|
CPSF73a/Ysh1
|
Endonuclease
|
At1g61010 (CPSF73-I)
|
Score = 759 bits (1960), Expect = 0.0
|
|
CPSF73b/-1
|
Similar to CPSF73a
|
At2g01730 (CPSF73-II, FEG)
|
Score = 561 bits (1445), Expect = 6e-158
|
|
CPSF30/Yth1
|
RNA binding, endonuclease
|
At1g30460 (CPSF30, OXT6)
|
Score = 97.8 bits (242), Expect = 5e-19
|
|
CstF77/Rna14
|
Scaffold for CstF64 and CstF50; bridge to CPSF
|
At1g17760 (CSTF77)
|
Score = 386 bits (991), Expect = 3e-105
|
|
CstF64/Rna15
|
Binds to the downstream element
|
At1g71800 (CSTF64)
|
Score = 121 bits (304), Expect = 9e-26
|
|
CstF50/-1
| |
At5g60940 (CSTF50)
|
Score = 291 bits (745), Expect = 5e-77
|
|
hPfs2/Pfs2
|
RNA binding
|
At5g13480 (FY)
|
Score = 394 bits (1013), Expect = 7e-108
|
|
Multiple genes
|
|
PAP/Pap1
|
Creates the poly(A) tail
|
At1g17980 (PAPS1)
|
Score = 423 bits (1088), Expect = 2e-116
|
| | |
At2g25850 (PAPS2)
|
Score = 405 bits (1040), Expect = 8e-111
|
| | |
At3g06560 (PAPS3)
|
Score = 239 bits (611), Expect = 2e-61
|
| | |
At4g32850 (PAPS4)
|
Score = 399 bits (1025), Expect = 4e-109
|
|
hFip1/Fip1
|
Interacts with PAP, regulates CPSF30 activity
|
At3g66652 (FIPS3)
|
Score = 58.2 bits (139), Expect = 3e-06
|
| | |
Ag5g58040 (FIPS5)
|
Score = 65.1 bits (157), Expect = 3e-08*
|
|
CFIm25/-1
|
Cleavage factor; Interact with RNA
|
At4g25550 (CFIS2)
|
Score = 245 bits (625), Expect = 1e-63
|
| | |
At4g29820 (CFIS1)
|
Score = 187 bits (474), Expect = 5e-46
|
|
hClp1/Clp1
|
RNA kinase
|
At3g04680 (CLPS3)
|
Score = 330 bits (845), Expect = 1e-88
|
| | |
At5g39930 (CLPS5)
|
Score = 252 bits (643), Expect = 4e-67
|
|
hPcf11p/Pcf11
|
Interacts with CstF
|
At1g66500 (PCFS1)
|
Score = 57.0 bits (136), Expect = 2e-06
|
| | |
At4g04885 (PCFS4)
|
Score = 85.9 bits (211), Expect = 1e-14
|
| | |
At5g43620 (PCFS5)
|
Score = 57.0 bits (136), Expect = 2e-06
|
|
PabN/Pab1
|
Binds to poly(A), controls length of poly(A)
|
At5g10350 (PABN3)
|
Score = 122 bits (305), Expect = 2e-26,
|
| | |
At5g51120 (PABN2)
|
Score = 119 bits (297), Expect = 2e-25
|
| | |
At5g65260 (PABN1)
|
Score = 120 bits (302), Expect = 4e-26
|
|
Symplekin/Pta1
|
Part of CPSF
|
At5g01400 (ESP4, SYM5)
|
Score = 261 bits (666), Expect = 3e-67
|
| | |
At1g27590 (SYM1)
|
Score = 54.3 bits (129), Expect = 3e-05
|
| | |
At1g27595 (SYM2)
|
Score = 241 bits (616), Expect = 1e-61
|
|
No obvious homolog
|
|
CFIm68/59
|
Unknown
|
none
| |
|
-/Hrp1
|
Part of cleavage factor in yeast
|
none
| |
