Skip to main content

Table 1 Chemokine genes in zebrafisha

From: Extensive expansion and diversification of the chemokine gene family in zebrafish: Identification of a novel chemokine subfamily CX

Chemokin Chr Ori Location Exonsb GenBank ESTc aad O-Glycoe
CCL-chr25a 25 + 19027505–19029332 3 AB331747 EH278089 85 0 (0)
CCL-chr25b 25 + 19035165–19036703 3    110 0 (0)
CCL-chr25c 25 + 19075615–19076539 3    99 0 (0)
CCL-chr25d 25 + 19078908–19089162 3   Dr.112407 96 0 (0)
CCL-chr25e 25 + 19090993–19094737 3    95 0 (0)
CCL-chr25f 25 + 19100444–19101671 3   Dr.89844 102 1 (2)
CCL-chr25g 25 + 19268675–19270505 3   Dr.111511 85 0 (0)
CCL-chr25h 25 + 19276303–19277760 3    109 0 (0)
CCL-chr25i 25 - 19352626–19353853 3   Dr.89844 102 1 (2)
CCL-chr25j 25 - 19359559–19363303 3    95 0 (0)
CCL-chr25k 25 - 19365134–19374852 3    96 0 (0)
CCL-chr25l 25 - 19376636–19377560 3    99 0 (0)
CCL-chr25m 25 - 19421398–19422248 3    201 60 (60)
CCL-chr25n 25 - 19435712–19436261 3    93 0 (0)
CCL-chr25o 25 - 19437496–19438019 3 AB331748 Dr.112677 94 0 (0)
CCL-chr25p 25 - 19457474–19458202 3    157 37 (37)
CCL-chr25q 25 - 19462780–19463308 3    94 1 (1)
CCL-chr25r 25 - 19466008–19467922 3   Dr.125717 87 0 (2)
CCL-chr25s 25 + 19503739–19505640 3 AB331749 Dr.125717 84 0 (1)
CCL-chr25t 25 + 19508322–19508850 3 AB331750   94 1 (1)
CCL-chr25u 25 + 19513230–19513960 3    158 37 (37)
CCL-chr25v 25 + 19536723–19537246 3 AB331751   94 0 (0)
CCL-chr25w 25 + 19538474–19539024 3    93 0 (0)
CCL-chr25x 25 + 19552761–19553847 3    277 104 (104)
CCL-chr25y 25 - 19582718–19584968 3 AB331752 Dr.93495 98 0 (0)
CCL-chr25z 25 - 20857424–20858639 3   Dr.131114 163 36 (36)
CCL-chr25aa 25 - 21213925–21215140 3   Dr.131114 163 36 (36)
CCL-chr25ab 25 - 21241306–21243245 3 AB331753 Dr.93495 98 1 (1)
CCL-chr25ac 25 - 21252391–21254330 3 AB331754 Dr.93495 98 1 (1)
CCL-chr24a 24 + 30502892–30505104 4 AB331755 DV590257 102 3 (3)
CXCL-chr24a 24 - 31852479–31853361 3    187 7 (7)
CXCL-chr24b 24 - >31853500–31855624 3    153 9 (9)
CXCL-chr24c 24 - 31862084–31862883 3   Dr.92223 159 18 (18)
CXL-chr24a 24 + 32266050–32284596 5 AB331756 Dr.18825 115 0 (1)
CXL-chr24b 24 + 32290478–32291634 5    115 0 (0)
CCL-chr24b 24 + 32293590–32295005 5 AB331757 CO359348 116 0 (1)
CCL-chr24c 24 + 32302418–32304645 5 AB331758 Dr.130538 118 0 (0)
CCL-chr24d 24 + 32306481–32308480 5   CT653601 127 0 (0)
CCL-chr24e 24 + 32322636–32323565 5    118 0 (0)
CCL-chr24f 24 + 32329863–32331934 5    117 0 (0)
CXCL-chr24d 24 + 32345052–32346003 3    210 6 (6)
CXCL-chr24e 24 - 32352898–32353697 3 AB331759 Dr.92223 159 18 (18)
CCL-chr24g 24 - 32414552–32415181 3   Dr.111235 115 0 (0)
CCL-chr24h 24 - 32433297–32434055 4    120 2 (2)
CCL-chr24i 24 - 32440032–32440892 4   Dr.125570 135 17 (18)
CCL-chr24j 24 + 32451758–32453957 4 AB331760 Dr.897 98 0 (0)
CCL-chr24k 24 + 32461305–32462101 4    108 5 (5)
CCL-chr24l 24 + 32463704–32464522 4    106 7 (12)
CCL-chr24m 24 + 32470848–32473296 4 AB331761 Dr.29197 97 0 (2)
CCL-chr24n 24 + 33094971–33096928 5    117 0 (0)
CCL-chr23a 23 + 16185601–16187309 3    245 29 (29)
CXCL12bL 22 - 31836220–31849609 4    97 0 (0)
cxcl12b f 22 - 33091953–33105285 4 NM_198068 Dr.27045 97 0 (0)
CCL-chr20a 20 - 45279550–45280130 3   Dr.22573 103 0 (0)
CCL-chr20b 20 + 455913434–5591923 3   Dr.22573 103 0 (0)
CCL-chr20c 20 + 45594097-45594746 3   Dr.84529 103 0 (0)
CCL-chr20d 20 + 45600362–45600907 3 AB331762 EH279763 101 1 (1)
CCL-chr20e 20 + 45604369–45606327 5   EH547529 174 1 (1)
CCL-chr20f 20 + 45615627–45618919 5    163 3 (3)
CCL-chr20g 20 - 46647358–46648220 4 AB331763   106 0 (0)
CXL-chr19a 19 + 23008696–23011009 5    115 0 (1)
CCL-chr17a 17 - 43053286–43056335 4 AB331764 Dr.110765 111 7 (7)
CCL-chr17b 17 - 43061247–43065632 5   CT653600 127 0 (0)
CCL-chr17c 17 - >43069244–43070260 (5)g    108 0 (1)
scyba f 14 - 27560158–27568603 4 NM_131627 Dr.117782 100 0 (0)
CXCL-chr13a 13 + 36660529–36661730 3   EH438452 90 0 (2)
CXCL-chr13b 13 + 36664145–36666791 4   Dr.88 120 0 (0)
cxcl12a f 13 - 36845066–36857673 4 NM_178307 Dr.99352 99 0 (0)
CXCL-chr13c 13 + 51125309–51128037 3 AB331765 Dr.82552 117 7 (8)
CXCL-chr13d 13 + 51138026–51141305 3 AB331766 Dr.92011 101 0 (0)
CXL-chr12a 12 + 23085158–23087450 5   Dr.32443 123 0 (2)
CCL-chr11a 11 + 5493062–5496539 3 AB331767 Dr.81010 106 0 (0)
CCL-chr11b 11 + 5570254–5575583 5 AB331768 Dr.85019 126 1 (2)
CCL-chr10a 10 - 13736505–13739228 4   Dr.92663 114 0 (1)
CCL-chr10b 10 + (3289242)-48827709 3 AB331769 EE205697 91 0 (0)
ccl1 f 8 - 10307292–10323292 3 NM_131062 Dr.76247 93 0 (0)
CCL-chr7a 7 + 51890176–51890837 3   Dr.111629 93 0 (0)
CCL-chr5a 5 - 8165983–8172469 4 AB331770 Dr.86771 119 0 (0)
CCL-chr5b 5 - 8182370–8184709 3   EH281478 107 0 (0)
CXCL-chr5a 5 - 33964121–33965393 4   Dr.84656 115 2 (2)
CXCL-chr5b 5 - 33996816–33998000 4   Dr.111133 102 0 (0)
CXCL-chr5c 5 + 50933627–50940725 4 AB331771 CN175165 147 0 (0)
CXCL-chr5d 5 + 50944403–50945002 4   Dr.115041 94 0 (1)
CXCL-chr5e 5 + 50954047–50954534 4   Dr.89665 121 13 (13)
CXCL-chr5f 5 + 50959591–50960454 4    96 0 (2)
CXCL-chr5g 5 + 51761233–51761767 3    106 2 (2)
CXCL-chr5h 5 + 51766388–51766850 3    92 0 (0)
CXCL-chr5i 5 + 51772479–51772941 3    92 0 (0)
CCL-chr2a 2 - 38292712–38293705 3    247 47 (47)
CCL-chr2b 2 - 38310649–38315607 3    195 16 (16)
CCL-chr2c 2 - 38329197–38329990 3   Dr.113953 150 0 (0)
XCL-chr2a 2 - 38339304–38339976 3   EH453597 126 1 (3)
CCL-chr2d 2 + 38353445–38354111 4   Dr.86775 138 8 (8)
CCL-chr2e 2 + 38356664–38358727 4 AB331772 Dr.113952 111 4 (4)
CCL-chr2f 2 - 38369684–38371438 3   Dr.92436 89 0 (0)
CXCL-chr1a 1 + 14796681–14797310 4    98 0 (0)
CXCL-chr1b 1 + 15001965–15002594 4    98 0 (0)
CXCL-chr1c 1 - 61228824–61231793 4 AB331773 Dr.17289 114 0 (1)
CCL-chr1a 1 - 68219709–68220766 3    254 59 (59)
CCL-chr1b 1 - 68251400–68252095 3    130 0 (0)
CCL-chr1c 1 - 68253292–68254202 3    220 26 (26)
CCL-chrUa U     AB331774 EH599800 99 0 (0)
CCL-chrUb U     AB331775   108 0 (0)
CCL-chrUc U     AB331776   99 0 (0)
CCL-chrUd U     AB331777   94 1 (1)
CCL-chrUe U     AB331778   110 0 (0)
CCL-chrUf U      Dr.83347 144 6 (6)
CCL-chrUg U      CK237158 131 3 (3)
CCL-chrUh U      EH479986 95 0 (0)
CCL-chrUi U     AB331779 BQ615577 93 0 (0)
CCL-chrUj U     AB331780   86 0 (0)
  1. a Zebrafish Zv6 assembly was used for the analyses.
  2. b Number of exons containing coding sequences.
  3. c Dr numbers are Unigene IDs (Build #101).
  4. d Amino acid residues. e Number of O-glycosylation sites in the COOH-terminal region. The number in parentheses shows such number in the whole mature peptide.
  5. f Bold letters are approved gene symbols.
  6. g The last exon sequence has not yet been determined.
\