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Table 4 Co-expression between HAP4 and its six target genes are mediated by a locus in marker block 41.

From: Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study

Gene1 Gene2 LA score I Corr(Gene1, Gene2) LA
    Overall RM BY score II
HAP4 ATP4 -0.264 0.38 0.60 0.10 0.321
HAP4 ATP5 -0.231 0.29 0.51 0.04 0.237
HAP4 ATP7 -0.216 0.25 0.49 0.01 0.292
HAP4 ATP14 -0.292 0.20 0.50 -0.16 0.367
HAP4 MEF2 -0.256 0.21 0.53 -0.10 0.381
HAP4 PPA2 -0.334 0.21 0.57 -0.19 0.322
  1. For the column of LA score I, we use Z = marker profile of Marker block 41. We ask whether more extreme LA scores can be observed for all the six cases by chance. Using random permutation, we get 32 positive results from 5000 permutations, corresponding to a permutation p-value 0.0064. For the column of LA score II, we use Z = expression profile of TCM62. We ask whether more extreme LA scores can be observed for all the six cases by chance. Using random permutation, we get 10 positive results from 5000 permutations, corresponding to a permutation p-value 0.002.
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