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Table 1 Sequence data from pyrosequencing

From: Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

Ssc.14343.1.S1_at, probe 2, Rank 2 TPT 1, regulation of apoptosis

25MA

TAATCACTGGTGTG GATATTGTCATGAAC

25MB

TAATCACTGGTGTG GATATTGTCATGAAC

25MC

TAATCACTGGTGTG GATATTGTCAACACC

25WA

TAATCACTGGTGTC GATATTGTCATGAAC

25WB

TAATCACTGGTGTC GATATTGTCATGAAC

25WC

TAATCACTGGTGTC GATATTGTCATGAAC

Probe

CACTGGTGTC GATATTGTCATGAAC

SNP

S

Ssc.13476.1.A1_at, probe 1, Rank 732 PEG10, Paternally Expressed 10

25MA

GATATCTCTG TAAGTGGACACGTGT

25MB

GATATCTCTA TAAGTGGACACGTGT

25MC

GATATCTCTG TAAGTGGACACGTGT

25WA

GATATCTCTA TAAGTGGACACGTGT

25WB

GATATCTCTA TAAGTGGACACGTGT

25WC

GATATCTCTA TAAGTGGACACGTGT

probe

GATATCTCTA TAAGTGGACACGTGT

SNP

R

  1. Pyrosequencing data confirms the intensity plot where a G/C = S polymorphism is identified (top).
  2. Pyrosequencing confirms the non-breed specific nature of the polymorphism, namely A/G = R (bottom).
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BMC Genomics

ISSN: 1471-2164

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