Skip to main content

Advertisement

Table 1 Comparison between two Microcystis genomes

From: Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium

Strain (a) Mic-PCC7806 Mic-NIES843
Genome length 5.17 Mb (116 Contigs) 5.84 Mb
rRNA loci 2 2
tRNA loci 41 42
Number of CDSs 5292 6312
Putative transposases (COG similarity) 362 (6.8%) 469 (7.4%)
Proteins linked by BDBH 3322 (63%) 3322 (53%)
Proteins absent in the other Microcystis genome (b) 838 (16%) 1760 (28%)
Strain-specific proteins (c) 644/838 (76%) 1484/1760 (84%)
Large repeats (d) 11.7% 11.7%
  1. (a) See the Methods section for the strain identifiers.
  2. (b) Proteins that do not share similarity (> 40%) with any proteins in the other Microcystis genome.
  3. (c) Proteins with no similarity (> 40%) with any proteins in the 44 other cyanobacterial genomes.
  4. (d) Proportion of large repeats (> 1000 bases; > 90% identity) in the genome (see Figure 2).
  5. Mb: megabases; CDS: coding sequence; COG: cluster of orthologs; BDBH: bidirectional best hit.