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Table 1 Average (Av.) relative ncRNA expression levels after RNAi depletion of individual protein components of snoRNPs.

From: Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins

   ncRNA class
Protein depleted C/D snoRNAs H/ACA snoRNAs snRNAs Sm Y RNAs sbRNAs Other ncRNAsa
   Av. P Av. P Av. P Av. P Av. P Av. P
C/D box snoRNPs Snu13 0.24 1.6 × 10-6 0.83 2.9 × 10-3 0.99 1.9 × 10-2 0.48 4.4 × 10-1 5.44 6.6 × 10-3 0.52 4.9 × 10-1
  Nop1 0.55 1.2 × 10-5 1.31 1.6 × 10-3 1.07 5.1 × 10-2 0.68 7.7 × 10-1 5.70 1.3 × 10-1 0.84 4.9 × 10-1
  Nop58 0.33 1.4 × 10-6 1.03 1.2 × 10-4 0.76 1.5 × 10-2 0.38 3.5 × 10-1 5.39 1.3 × 10-1 0.53 3.9 × 10-2
  Nop56 0.93 3.7 × 10-2 0.96 8.2 × 10-1 1.03 2.8 × 10-1 0.96 8.3 × 10-1 1.98 4.1 × 10-4 0.99 8.9 × 10-1
  Gar1 0.89 7.3 × 10-2 0.93 7.1 × 10-1 0.93 8.2 × 10-1 0.81 8.8 × 10-2 5.61 2.7 × 10-7 0.91 9.0 × 10-1
H/ACA Box snoRNPs Cbf-5 0.92 7.8 × 10-2 0.68 1.2 × 10-5 1.01 9.3 × 10-3 0.76 3.6 × 10-1 1.28 8.4 × 10-3 0.90 3.8 × 10-1
  Nhp2 0.88 1.4 × 10-2 0.41 7.4 × 10-9 1.09 3.0 × 10-3 1.07 9.6 × 10-2 3.54 6.3 × 10-3 0.80 3.7 × 10-1
  Nop10 0.87 3.2 × 10-3 0.19 1.3 × 10-8 0.68 6.0 × 10-2 0.97 1.2 × 10-1 3.42 5.8 × 10-3 0.93 5.7 × 10-2
  1. Relative expression was calculated as treated sample (RNAi; Cy5)/control (Cy3). Statistical significance was calculated using a two tailed student t-test.
  2. a "Other ncRNAs" include SRP RNA, RNase P RNA and unclassified ncRNAs.