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Table 5 Classification of repetitive sequences in the potato and tomato genome.

From: Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition

Classification

Potato BAC

Tomato BAC

Potato BES

Tomato BES

 

Total

Syntenic

Non-syntenic

   

Transposable elements

12.27%

8.51%

13.19%

10.66%

13.09%

15.93%

Retrotransposons

9.58%

7.22%

11.19%

8.32%

11.77%

14.54%

   Ty1-copia

1.92%

1.15%

1.79%

3.48%

1.82%

3.75%

   Ty3-gypsy

3.34%

4.09%

6.33%

0.99%

4.60%

4.61%

   LINE

1.09%

0.46%

0.72%

0.77%

0.80%

0.44%

   SINE

0.54%

0.30%

0.46%

0.47%

0.27%

0.12%

   Unclassified Retrotransposons

2.70%

1.22%

1.90%

2.61%

4.29%

5.64%

Transposons

2.69%

1.29%

1.99%

2.35%

1.32%

1.39%

   Ac/Ds

0.13%

0.13%

0.21%

0.01%

0.13%

0.05%

   CACTA, En/Spm

0.03%

0.05%

0.07%

0.00%

0.03%

0.01%

   Unclassified Transposons

2.53%

1.11%

1.71%

2.34%

1.15%

1.32%

Telomere-related

0.04%

0.00%

0.01%

0.00%

1.31%

0.73%

   Telomere-associated

0.04%

0.00%

0.01%

0.00%

0.49%

0.72%

   Telomere

0.00%

0.00%

0.00%

0.00%

0.82%

0.01%

Ribosomal RNA genes

0.07%

0.08%

0.12%

0.02%

0.50%

3.99%

   45S rDNA

0.02%

0.03%

0.05%

0.01%

0.43%

3.96%

   5S rDNA

0.05%

0.05%

0.07%

0.02%

0.07%

0.03%

Unclassified

13.51%

12.38%

19.18%

11.61%

19.28%

25.64%

Total

25.90%

20.97%

32.50%

22.30%

34.18%

46.29%