Table 1 Experimental design and comparisons
From: Genome-wide transcriptional changes induced by phagocytosis or growth on bacteria in Dictyostelium
Comparison | Cell strains and experimental conditions | Differentially expressed genes are: |
|---|---|---|
A | axenic AX2 cells incubated on E. coli for 2 hours axenic AX2 cells incubated in medium for 2 hours | upregulated, if the log2 ratio of RNA expression values in nominator vs. denominator: ≥ 1 |
B | AX2 cells growing exponentially on E. coli AX2 cells growing exponentially in medium | Â |
C | axenic AX2 cells incubated on E. coli for 2 hours AX2 cells growing exponentially on E. coli | downregulated, if the log2 ratio of RNA expression values in nominator vs. denominator: ≤ -1 |
D | V12M2 cells growing exponentially on E. coli AX2 cells growing exponentially on E. coli | Â |