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Table 1 Experimental design and comparisons

From: Genome-wide transcriptional changes induced by phagocytosis or growth on bacteria in Dictyostelium

Comparison Cell strains and experimental conditions Differentially expressed genes are:
A axenic AX2 cells incubated on E. coli for 2 hours
axenic AX2 cells incubated in medium for 2 hours
upregulated, if the log2 ratio of RNA expression values in nominator vs. denominator: ≥ 1
B AX2 cells growing exponentially on E. coli
AX2 cells growing exponentially in medium
 
C axenic AX2 cells incubated on E. coli for 2 hours
AX2 cells growing exponentially on E. coli
downregulated, if the log2 ratio of RNA expression values in nominator vs. denominator: ≤ -1
D V12M2 cells growing exponentially on E. coli
AX2 cells growing exponentially on E. coli