Table 3 Proportion of gene models with homologies to E. grandis cDNAs.
From: High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
Organism | BlastX threshold | Matches against 454 unigenes | Matches against Sanger unigenes |
|---|---|---|---|
Arabidopsis (31,921) | 1e-5 | 14250 (45%) | 10154 (32%) |
| Â | 1e-10 | 12347 (39%) | 9561 (30%) |
| Â | 1e-20 | 9077 (28%) | 8410 (26%) |
Arabidopsis with transcript evidence (22,032) | 1e-5 | 12790 (58%) | 9542 (43%) |
| Â | 1e-10 | 11265 (51%) | 9029 (41%) |
| Â | 1e-20 | 8489 (39%) | 8003 (36%) |
Populus (45,555) | 1e-5 | 17724 (39%) | 11580 (25%) |
| Â | 1e-10 | 15383 (34%) | 10962 (24%) |
| Â | 1e-20 | 11190 (25%) | 9701 (21%) |
Oryza (66,710) | 1e-5 | 14510 (22%) | 9893 (15%) |
| Â | 1e-10 | 12139 (18%) | 9193 (14%) |
| Â | 1e-20 | 8393 (13%) | 7834 (12%) |