Cross-platform comparison of SYBR® Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study

Table 1 Gene list of the custom SYBR Green RT² Profiler PCR Array showing the overlaps with the other three quantitative gene analysis technologies

Probes present in all three quantitative platforms	Gene Symbol	TaqMan and QuantiGene	Gene Symbol	TaqMan and StaRT-PCR	Gene Symbol
1	ABCD2	42	ABCC2	72	ANXA1
2	ADM	43	ABCD1	73	ARHGDIB
3	AES	44	ABCG5	74	ATP1B2
4	ANXA5	45	AFP	75	CDK8
5	BAG1	46	APC	76	DAP
6	BRCA2	47	APOB	77	ERCC5
7	CCNA2	48	APOH	78	GSTP1
8	CDK9	49	BAG4	79	GSTT1
9	CDKN1A	50	CCL20	80	NTRK3
10	CYP1B1	51	CDK5R1	81	PCNA
11	DAD1	52	CHEK1	82	PPP3CA
12	DPP4	53	CHGA	83	PTCH
13	FADD	54	COL1A1	84	TP53
14	FGF9	55	CSNK2A2
15	FOXA1	56	DRD5	House Keeping Genes	Gene Symbol
16	FURIN	57	EDN1	85	B2M
17	G6PD	58	EGFR	86	ACTB
18	ICAM1	59	EIF2AK2	87	GAPDH
19	IGF2R	60	ERBB4	88	HPRT1
20	IGFBP2	61	GFAP	89	POLR2A
21	IGFBP5	62	IGF2	90	RPL13A
22	IL8	63	IGFBP1
23	INPPL1	64	JAK2
24	JUN	65	JUNB
25	KCNS3	66	KCNC1
26	KDR	67	MIF
27	KIT	68	MMP1
28	LDLR	69	RAD51
29	MAP2K6	70	STAT4
30	MAP3K14	71	TFF1
31	MX2
32	MYB
33	MYC
34	PTGS2
35	RAD52
36	RARA
37	RB1
38	SELE
39	SLC2A1
40	SOD1
41	TYMS

ISSN: 1471-2164