Table 2 Proposed annotation of the genes regulated by a T-box that were assigned as "hypothetical protein" in the original NCBI annotation file.
Species | Gene ID | T-box | Proposed function |
|---|---|---|---|
Bacillus halodurans C-125 | BH0807 | Lys | Lysine-specific permease |
Bacillus subtilis 168 | BSU02530 | Trp | Anti TRAP protein |
| Â | BSU34010 (yvbW) | Leu | Leucine-specific permease |
Enterococcus faecalis V583 | EF2480 | Gly | Gly related hypothetical |
Lactobacillus acidophilus NCFM | LBA1071 | Ile | Ile related hypothetical |
Lactobacillus johnsonii NCC 533 | LJ0632 | Met | 5-methyltetrahydropteroyltriglutamate – homocysteine methyltransferase (Methionine synthase) |
Lactobacillus plantarum WCFS1 | lp_3283 | Met | 5-methyltetrahydropteroyltriglutamate – homocysteine methyltransferase (Methionine synthase) |
Listeria sp.1 | lmo1740 | His | Histidine transport system permease protein hisM |
| Â | lmo2587 | Met | Met related cytosolic hypothetical |
Staphylococcus aureus 2 | SA0347 | Met | Cystathionine gamma-synthase |
| Â | SA1199 | Trp | Anthranilate synthase component I |
Streptococcus agalactiae 3 | SAG0809 | Ala | Ala-tRNA ligase related hypothetical |
Streptococcus pneumoniae 4 | spr0489 | Val | Val-tRNA ligase related hypothetical |
| Â | spr1241 | Ala | Ala-tRNA ligase related hypothetical |
| Â | spr1331 | Gly | Gly-tRNA ligase related hypothetical |
| Â | spr1471 | Thr | Thr-tRNA ligase related hypothetical |
| Â | spr1638 | Trp | Trp biosynthesis related hypothetical |
Streptococcus thermophilus 5 | str0474 | Val | Val-tRNA ligase related hypothetical |
| Â | str1594 | Trp | Chorismate mutase |