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Table 1 cDNA-AFLPs redundancy.

From: Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology

Species

Sequences

Contigs

Singlets

Redundancy

GC content

 

No.

%

No.

No.

%

%

%

Aegilops tauschii

115

1.6

19

73

63.5

36.5

46.4

Arabidopsis spp.

155

2.2

4

147

94.8

5.2

43.3

Brassica napus

107

1.5

3

101

94.4

5.6

46.2

Cicer arietinum

48

0.7

5

37

77.1

22.9

43.4

Fragaria ananassa

61

0.9

0

61

100.0

0.0

46.7

Hordeum vulgare

85

1.2

6

73

85.9

14.1

50.2

Lolium perenne

34

0.5

0

34

100.0

0.0

51.7

Lotus japonicum

148

2.1

3

142

95.9

4.1

41.3

Lysopersicon esculentum

227

3.2

24

161

70.9

29.1

41.8

Malus domestica 1

525

7.4

47

409

77.9

22.1

45.7

Medicago spp.

681

9.6

25

625

91.8

8.2

41.4

Nicotiana spp.

2,995

42.3

308

2,235

74.6

25.4

42.3

Oryza sativa

598

8.4

58

461

77.1

22.9

45.6

Phaseolus vulgaris

98

3.0

7

82

83.7

16.3

44.9

Petunia hybrida

212

1.4

14

181

85.4

14.6

42.2

Populus spp.

865

12.2

97

624

72.1

27.9

44.4

Prunus persica

94

1.3

11

57

60.6

39.4

45.2

Prunus avium

89

1.3

16

51

57.3

42.7

43.9

Salix spp.2

69

1.0

8

61

88.4

11.6

44.2

Solanum spp.

300

4.2

52

167

55.7

44.3

42.6

Tirticum aestivum

74

1.0

7

56

75.7

24.3

48.3

Vitis vinifera 3

226

3.2

16

180

79.6

20.4

47.1

Overall

7,806

 

730

6,018

77.1

22.9

44.9

  1. Redundancy information on cDNA-AFLP sequences assessed on the basis of the number and proportion of contigs and singlets. For each sequence subset, the number of retrieved sequences and the percentage of the total, the number of contigs, the number of singlets and the percentage of the total, the redundancy, and the GC content are reported.
  2. 1278 sequences deposited in GenBank but not yet publicly released; 2All 69 sequences were released after February 1th, 2007; 3113 sequences are not yet publicly available.