Skip to main content

Table 8 Specifications for the new intron mutants used in our study.

From: Correlation between the secondary structure of pre-mRNA introns and the efficiency of splicing in Saccharomyces cerevisiae

mutant

segment location

original sequence

substitution/insertion

rps17b-L1

258–268 (11 nt)

UGAAGAGAGGU

augagacaacu

rps17b-L2

138–157 (20 nt)

GAUUAGAAAACUCCAUUACU

cuuaaguuaguaaauaccuc

rps17b-L3

22–47 (26 nt)

UGAAGCCGGAUAUGAUGGACUGGGC

uuaAGCCGcuacuacuUGGACUGucg

rps17b-L4

167–189 (23 nt)

AGAAGAGCGCUCAAUGAAGUAGU

uggcuuggguuaguaggugccuc

rps17b-S1

217–231 (15 nt)

AAUUGCUUUCGAAUG

uuucauguguucagc

rps17b-S2

280–286 (7 nt)

UAAGUUG

uacguac

rps17b-S3

246–253 (8 nt)

AUCCAAUG

uagCggcu

rps17b-S4

244–253 (10 nt)

UUAUCCAAUG

cuucaucaac

rps6b-L1

21–54 (34 nt)

CCUUAGAAUUCUAAUGAAUCAGCACGCGCUAACC

guauuuugggugugucccuguuauaaauaauacc

rps6b-S1

19–29 (11 nt)

AUCCUUAGAAU

uuuguuaguaa

rps6b-S2

87–113 (27 nt)

CACAAAUUAGUGCACUAUAAUAAAAAU

uuauaaauagugauaccauuugguaaa

rps6b-S3

21–57 (37 nt)

CCUUAGAAUUCUAAUGAAUCAGCACGCGCUAACCGGC

aaauuccaacguuucccugcaacaugccuuucuuccg

rps6b-S4

38–55 (18 nt)

AUCAGCACGCGCUAACCG

auucccaacagacugucc

rps6b-S5

337–345

GUAUUAUUU

GgUguucAUUAUUacaU

ape2-L1

159–175 (17 nt)

UGUUACCCUCAUAUUCU

ggguacaauuaauagag

ape2-L2

237–252 (16 nt)

GCAAUAGCUUAGGUAA

ccuucguacuuuuggg

ape2-S1

23–37 (15 nt)

CAAAGAAACAAGGAA

agggcagaaauagaa

ape2-S2

43–57 (15 nt)

AUACAUAAUAUAAAU

aacugguagguacgu

ape2-S3

237–252 (16 nt)

GCAAUAGCUUAGGUAA

caaugaaugagaacuc

ape2-S4

159–175 (17 nt)

UGUUACCCUCAUAUUCU

aaauauuaccuaagcua

ape2-S5

300–322 (23 nt)

CUCGUUACCGACCUUUGAGUUCU

uuaagcuuuuguguuugagaaca

  1. The upper case letters represent the original sequences and the lower case letters represent substitution or insertion sequences. The first base of an intron is numbered 1.