Skip to main content
Figure 8 | BMC Genomics

Figure 8

From: Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT

Figure 8

Comparison of four types of analysis using simulated data sets. For ten tetraploid, biallelic populations with 100 individuals each, haplotypes comprising six SNP sites were simulated. 0–10% noise was added to the data. Unphased simulated data sets were analysed with SATlotyper using four different methods: 1) first inference without optimisation; 2) alternative haplotype inferences scored by bootstrapping, selection of the best scored; 3) alternative haplotype inferences scored by bootstrapping, further optimisation of genotype inference; 4) first haplotype inference with optimisation of genotype inference. On the basis of the Hamming distance between predicted and original simulated genotype inferences, the correctness was calculated, normalised and plotted against the noise. Every data point represents the mean value of ten populations for the respective value of noise.

Back to article page