Table 4 Homology relationships of the EEMS markers.
From: Gene-based microsatellite development for mapping and phylogeny studies in eggplant
Marker | SGN Unigene ID | Homologous Arabidopsis peptide | Homologous ESTs in tomato, potato or pepper (GenBank ID) | Annotation | e-value | SSR in the same position |
|---|---|---|---|---|---|---|
EEMS06 | U206099 | DN587316 | 47382.1 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 47382 | e-100 | ||
AW029731 | EST272986 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28K19 | 7e-80 | ||||
EEMS07 | U206473 | At3g55570.1 | CV506255 | 72934.1 Mixed Floral Solanum tuberosum cDNA clone 72934 | 2e-77 | |
CA525885 | KS12063A07 KS12 Capsicum annuum cDNA | 1e-75 | ||||
AK224899 | Solanum lycopersicum cDNA, clone: FC25DG07, HTC in fruit | 6e-65 | ||||
EEMS10 | U206024 | CK274806 | EST720884 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADJ52 | e-164 | + | |
EEMS14 | U205878 | AtCg00070.1 | DQ347958 | Solanum bulbocastanum cultivar PT29 chloroplast, complete genome | 0.0 | |
DQ347959 | Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome | 0.0 | + | |||
ER831875 | PPTC658TF Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY138_J19, genomic survey sequence | 0.0 | + | |||
EEMS15 | U207285 | At1g15820.1 | BI435095 | EST537856 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCBZ49 | e-139 | |
M32605 | Tomato chlorophyll a-binding protein (Cab10A) gene | e-124 | ||||
EEMS17 | U206974 | At5g53360.1 | AA824717 | CT008.SK Tomato Leaf cDNA from cv. VFNT cherry Lycopersicon esculentum cDNA clone CT008 | 1e-71 | + |
DN587261 | 47295.1 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 47295 | 3e-60 | ||||
EEMS18 | U205890 | At1g08200.1 | BI932492 | EST552381 tomato flower, 8 mm to preanthesis buds Lycopersicon esculentum cDNA clone cTOC23G14 | 0.0 | |
EEMS20 | U206004 | At5g52990.1 | ||||
EEMS21 | U207374 | At3g56860.3 | DQ284462 | Solanum tuberosum clone 072A05 RNA-binding protein AKIP1-like mRNA | e-148 | |
EEMS22 | U206874 | At1g07790.1 | AC204499 | Solanum tuberosum chromosome 6 clone RHPOTKEY069B12 | e-129 | + |
AI778436 | EST259315 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES5G8 | e-127 | + | |||
CA524430 | KS12037D12 KS12 Capsicum annuum cDNA, mRNA sequence | e-111 | ||||
EEMS23 | U207287 | At2g25080.1 | BQ113411 | EST598987 mixed potato tissues Solanum tuberosum cDNA clone STMCN43 | e-126 | + |
ES890426 | LET011F7_2005-09-27_1/LET011F7_A12_1 Solanum lycopersicum trichomes | e-114 | + | |||
EEMS24 | U205612 | At5g59910.1 | DQ268853 | Solanum tuberosum clone 167E08 histone H2B-like protein mRNA | 0.0 | + |
EEMS25 | U205886 | At5g59910.1 | BG643224 | EST511418 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF26P12 5' sequence | e-102 | + |
CV501903 | 66441.1 Mixed Floral Solanum tuberosum cDNA clone 66441 | 3e-86 | + | |||
EEMS26 | U205659 | At5g05270.2 | ||||
EEMS28 | U205759 | At5g20950.2 | CK262774 | EST708852 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABI35 | e-143 | + |
EEMS29 | U206036 | At5g38050.1 | BP877982 | Solanum lycopersicum cDNA, clone: FA10BF05, 5' end, expressed in maturing fruit | 7e-98 | + |
EEMS30 | U206347 | BQ508532 | EST615947 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGW83 | e-112 | + | |
EEMS31 | U206031 | At2g27710.2 | CV469914 | 42678.1 Common Scab-Challenged Tubers Solanum tuberosum cDNA clone 42678 | 0.0 | + |
DB680885 | Solanum lycopersicum cDNA, clone: LEFL1008CF04, 5' end, expressed in leaf | 0.0 | + | |||
EEMS32 | U207015 | At4g19430.1 | ||||
EEMS35 | U205935 | At1g62045.1 | CK861590 | 32687 In vitro Root Solanum tuberosum cDNA | e-105 | + |
AC215407 | Solanum lycopersicum Tomato chromosome 2, C02HBa0167J21, complete sequence. | 8e-89 | ||||
EEMS37 | U206679 | At5g64280.1 | ||||
EEMS38 | U205635 | At2g21660.1 | CK277760 | EST723838 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAE172 | e-113 | + |
EEMS39 | U206514 | At5g51120.1 | AI482858 | EST242181 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3D24 similar to RNA binding protein | e-108 | + |
EEMS41 | U205902 | At3g04940.1 | ||||
EEMS42 | U206785 | At1g11650.1 | CK271457 | EST717535 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACZ28 | e-132 | + |
AI781607 | EST262486 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES16F7 | e-125 | + | |||
EEMS44 | U205885 | At2g43090.1 | CK276247 | EST722325 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADS32 5' end, mRNA sequence. | e-148 | + |
EEMS45 | U94558 | BQ047601 | P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI18O9 | 0.0 | + | |
EF094557 | Capsicum frutescens chloroplast phosphate transporter (Pht2;1) | 0.0 | + | |||
BE433007 | EST399536 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG11H11 | 2e-98 | + | |||
EEMS48 | U205759 | At5g20950.2 | ||||
EEMS49 | U206896 | EI386298 | POTCQ36TF Solanum tuberosum RHPOTKEY BAC ends Solanu tuberosum genomic clone RHPOTKEY025_F23, genomic survey sequence. | 1e-37 | ||
EEMS50 | U205674 | At2g43360.1 | BF187639 | EST443926 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA41B6 | 0.0 | + |
BI935563 | EST555452 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD23C22 | e-167 |