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Table 4 Homology relationships of the EEMS markers.

From: Gene-based microsatellite development for mapping and phylogeny studies in eggplant

Marker SGN Unigene ID Homologous Arabidopsis peptide Homologous ESTs in tomato, potato or pepper (GenBank ID) Annotation e-value SSR in the same position
EEMS06 U206099   DN587316 47382.1 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 47382 e-100  
    AW029731 EST272986 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28K19 7e-80  
EEMS07 U206473 At3g55570.1 CV506255 72934.1 Mixed Floral Solanum tuberosum cDNA clone 72934 2e-77  
    CA525885 KS12063A07 KS12 Capsicum annuum cDNA 1e-75  
    AK224899 Solanum lycopersicum cDNA, clone: FC25DG07, HTC in fruit 6e-65  
EEMS10 U206024   CK274806 EST720884 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADJ52 e-164 +
EEMS14 U205878 AtCg00070.1 DQ347958 Solanum bulbocastanum cultivar PT29 chloroplast, complete genome 0.0  
    DQ347959 Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome 0.0 +
    ER831875 PPTC658TF Solanum tuberosum RHPOTKEY BAC ends Solanum tuberosum genomic clone RHPOTKEY138_J19, genomic survey sequence 0.0 +
EEMS15 U207285 At1g15820.1 BI435095 EST537856 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCBZ49 e-139  
    M32605 Tomato chlorophyll a-binding protein (Cab10A) gene e-124  
EEMS17 U206974 At5g53360.1 AA824717 CT008.SK Tomato Leaf cDNA from cv. VFNT cherry Lycopersicon esculentum cDNA clone CT008 1e-71 +
    DN587261 47295.1 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 47295 3e-60  
EEMS18 U205890 At1g08200.1 BI932492 EST552381 tomato flower, 8 mm to preanthesis buds Lycopersicon esculentum cDNA clone cTOC23G14 0.0  
EEMS20 U206004 At5g52990.1     
EEMS21 U207374 At3g56860.3 DQ284462 Solanum tuberosum clone 072A05 RNA-binding protein AKIP1-like mRNA e-148  
EEMS22 U206874 At1g07790.1 AC204499 Solanum tuberosum chromosome 6 clone RHPOTKEY069B12 e-129 +
    AI778436 EST259315 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES5G8 e-127 +
    CA524430 KS12037D12 KS12 Capsicum annuum cDNA, mRNA sequence e-111  
EEMS23 U207287 At2g25080.1 BQ113411 EST598987 mixed potato tissues Solanum tuberosum cDNA clone STMCN43 e-126 +
    ES890426 LET011F7_2005-09-27_1/LET011F7_A12_1 Solanum lycopersicum trichomes e-114 +
EEMS24 U205612 At5g59910.1 DQ268853 Solanum tuberosum clone 167E08 histone H2B-like protein mRNA 0.0 +
EEMS25 U205886 At5g59910.1 BG643224 EST511418 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF26P12 5' sequence e-102 +
    CV501903 66441.1 Mixed Floral Solanum tuberosum cDNA clone 66441 3e-86 +
EEMS26 U205659 At5g05270.2     
EEMS28 U205759 At5g20950.2 CK262774 EST708852 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POABI35 e-143 +
EEMS29 U206036 At5g38050.1 BP877982 Solanum lycopersicum cDNA, clone: FA10BF05, 5' end, expressed in maturing fruit 7e-98 +
EEMS30 U206347   BQ508532 EST615947 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGW83 e-112 +
EEMS31 U206031 At2g27710.2 CV469914 42678.1 Common Scab-Challenged Tubers Solanum tuberosum cDNA clone 42678 0.0 +
    DB680885 Solanum lycopersicum cDNA, clone: LEFL1008CF04, 5' end, expressed in leaf 0.0 +
EEMS32 U207015 At4g19430.1     
EEMS35 U205935 At1g62045.1 CK861590 32687 In vitro Root Solanum tuberosum cDNA e-105 +
    AC215407 Solanum lycopersicum Tomato chromosome 2, C02HBa0167J21, complete sequence. 8e-89  
EEMS37 U206679 At5g64280.1     
EEMS38 U205635 At2g21660.1 CK277760 EST723838 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAE172 e-113 +
EEMS39 U206514 At5g51120.1 AI482858 EST242181 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3D24 similar to RNA binding protein e-108 +
EEMS41 U205902 At3g04940.1     
EEMS42 U206785 At1g11650.1 CK271457 EST717535 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACZ28 e-132 +
    AI781607 EST262486 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES16F7 e-125 +
EEMS44 U205885 At2g43090.1 CK276247 EST722325 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADS32 5' end, mRNA sequence. e-148 +
EEMS45 U94558   BQ047601 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI18O9 0.0 +
    EF094557 Capsicum frutescens chloroplast phosphate transporter (Pht2;1) 0.0 +
    BE433007 EST399536 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG11H11 2e-98 +
EEMS48 U205759 At5g20950.2     
EEMS49 U206896   EI386298 POTCQ36TF Solanum tuberosum RHPOTKEY BAC ends Solanu tuberosum genomic clone RHPOTKEY025_F23, genomic survey sequence. 1e-37  
EEMS50 U205674 At2g43360.1 BF187639 EST443926 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA41B6 0.0 +
    BI935563 EST555452 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD23C22 e-167