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Table 1 The uORFs predicted by uORFSCAN in 5 out of 5

From: Conserved upstream open reading frames in higher plants

Rice Wheat Barley Maize Sorghum Avg. A.A. similarity (%) Putative functionb
Identifier 5'-UTR Identifier 5'-UTRa Identifier 5'-UTRa Identifier 5'-UTRa Identifier 5'-UTRa   
AK106095 131_9_17 TC265929 113_9_16 TC148181 67_9_16 TC288369 131_9_17 TC102998 149_9_17 100 Oxidoreductase
AK103391c 205_75_74 TC269775 251_75_62 TC134190 204_75_62 TC294011 215_75_75 TC103599 106_75_378 88 Trehalose-6-phosphate phosphatase
AK100589 d,e 240_9_334 TC264559 201_9_317 TC130707 228_9_318 TC292591 286_9_320 TC91317 260_9_329 50 S-adenosylmethionine decarboxylase (AdoMetDC)
  248_156_179   209_150_168   236_150_169   294_153_168   268_153_177 90  
  296_108_179   254_105_168   281_105_169   336_111_168   310_111_177 92  
AK073303 67_9_142 TC237149 75_9_113 TC132556 81_9_139 TC305609 127_9_69 TC102988 222_9_69 50 Alkaline phytoceramidase
  135_9_74   75_9_113   81_9_139   127_9_69   222_9_69 50  
AK072868 e 249_27_248 TC247418 258_27_266 TC139536 298_27_272 TC306591 444_27_564 TC102544 331_27_265 11 CBL-interacting protein kinase
  259_195_70   268_198_85   308_198_91   260_192_583   341_195_87 29  
  269_39_216   278_39_234   318_39_240   768_39_228   351_39_233 8  
  338_90_96   347_93_111   387_93_117   576_93_366   420_90_113 10  
  392_36_96   404_36_111   444_36_117   633_36_366   474_36_113 8  
AK072649 100_192_117 TC236348 79_192_117 TC133316 76_192_93 TC305793 180_192_116 TC93140 168_192_116 78 Ribosomal protein S6 kinase
AK066145 178_12_58 TC266262 149_12_73 TC134484 154_12_231 TC286452 224_12_70 TC94546 187_12_69 33 Ubiquitin-fold protein
AK064792 276_15_187 TC267323 254_15_188 TC132983 253_15_-9 TC306152 263_15_170 TC107743 230_15_150 87 F9L1.29 protein
AK060523 173_123_185 TC235416 201_126_157 TC148319 211_120_163 TC305149 255_129_195 TC103609 240_129_212 58 Ankyrin-3
  1. a Pre-orf distance_uORF length_intercistronic distance.
  2. b Functional annotation based on "The UniProt Knowledgebase (UniProt)" database.
  3. c One of several genes (identifiers) that are in multiple tables because different conserved uORFs were identified in the different datasets.
  4. d Previously reported upstream open reading frames (see 'Introduction' section on AdoMetDC).
  5. e Contain one or more nested uORFs.
  6. Ribosomal rRNA genes have been removed.
  7. See Table 2 for criteria for verifying rice uORFs in 5 out of 5.