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Table 3 Rice uORFs predicted by uORFSCAN that are conserved in Arabidopsis

From: Conserved upstream open reading frames in higher plants

Rice Arabidopsis Avg. A.A. similarity (%) Putative functionb
Identifier 5'-UTRa Identifier 5'-UTRa   
AK101100 142_12_21c,d AT1G51690.1 555_12_1160 33 Protein phosphatase 2a
AK066952 365_66_182 AT3G13225.1 364_63_431 27 WW domain containing protein
  368_63_182e   364_63_431 29  
  503_51_59   553_51_254 1  
AK119592 304_90_148c,d AT3G01470.1 162_87_120 36 Homeodomain leucine zipper protein
AK100589 248_156_179c,d AT3G02470.3 222_156_154 82 S-Adenosylmethionine decarboxylase
AK103391 176_30_148c,d,f AT4G22590.1 254_30_137 44 Trehalose-6-phosphate phosphatase
  205_75_74g   283_75_63g 71  
AK069534 813_9_432 AT4G12770.1 41_9_108 50 Auxilin-like protein
AK069526 214_126_544c AT4G19110.2 255_126_527 44 GAMYB-binding protein
  690_9_185c   603_9_296 50  
  820_36_28   398_36_474 17  
AK072868 338_90_96c,d AT5G58380.1 11_87_295 17 CBL-interacting protein kinase
AK060523 173_123_185c AT5G07840.1 289_117_250 36 Ankyrin-3
    313_93_250e 44  
  206_90_185e   313_93_250e 33  
AK067412 222_84_49c,h AT5G50180.1 357_84_79 4 Protein kinase ATN1
AK102277 228_117_150c AT1G68550.1 309_96_95 21 Hypothetical protein
AK100332 1174_21_883 AT5G44800.1 359_21_3 14 Helicase
  1618_21_439   359_21_3 17  
  1810_21_247   359_21_3 17  
AK059639 1_45_784 c ATCG00920.1 55_45_844 86 40S ribosomal protein S15
  1. a Pre-uORF distance_uORF length_intercistronic distance.
  2. b Functional annotation based on "the UniProt Knowledgebase (uniProt)" database.
  3. c Rice uORF is conserved in at least two orthologous cereal and Arabidopsis genes.
  4. d Rich in serine (at least 20%).
  5. e Nested uORF.
  6. f One of several genes (identifiers) that are in multiple tables because different conserved uORFs were identified in the different datasets.
  7. g Overlapping uORF.
  8. h Rice in arginine (at least 20%).
  9. Ribosomal rRNA genes have been removed.
  10. Rows in italics are false positive predictions (see Table 4. Criteria for verifying rice uORFs that are conserved in Arabidopsis)