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Table 6 Eight candidate genes with cis eQTL in the region of drip loss QTL of SSC2, 3, 4 and 6 and trait correlated expression

From: Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle

  eQTL trait correlated expression  
Probe_Set_ID SSC POS [cM] F r p-value q-value gene name (symbol)
Ssc.16645.1.S1_at 2 20 18.2 0.53 <.0001 9.44E-05 AHNAK nucleoprotein (AHNAK)
Ssc.2330.1.S1_at 2 35 6.5 -0.43 <.0001 8.77E-04 solute carrier family 3 (SLC3A2)
Ssc_3574_1_A1_at 3 0 9.4 0.56 <.0001 9.44E-05 mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4)
Ssc_10360_1_S1_at 3 0 5.1 0.51 <.0001 9.44E-05 hypothetical protein (LOC162073)
Ssc.20772.1.S1_at 3 37 5.2 -0.49 <.0001 1.03E-04 ubiquitin specific peptidase 39 (USP39)
Ssc_12110_1_S1_at 4 66 7.0 -0.58 <.0001 1.03E-04 papillary renal cell carcinoma (PRCC)
Ssc_5334_1_S1_at 6 42 7.5 -0.47 <.0001 1.03E-04 coenzyme Q9 homolog (CoQ9)
Ssc_4843_1_A1_at 6 46 5.1 0.45 <.0001 9.44E-05 Bardet-Biedl syndrome 2 (BBS2)