Figure 2

Database structure. A) Gene transcript (sequence) information section. Tables for EST sequences (DNA_SEQUENCE, LIBRARY, REPEATS, SEQ_ACCESSION, TAIL, TRIM, VECTOR), a table for mRNA sequences downloaded from GenBank (GB_ACCESSION) and tables for DFCI/TIGR contigs data (TIGR_GB, TIGR_GO) link through the tables GB_ACCESSION and SEQ_ACCESSION to annotation and microarray data. B) Protein and functional annotations section. A table, BLAST, for BLASTX search results, tables for gene ontology terms information (GENE_ANNOTATION, GRAPH_PATH, TERM, TERM2TERM, TERM_DEFINITION) and tables for KEGG pathways with the enzyme commission numbers (EC_DEF, EC_SWISS, EC_MAP) organize the annotation section. The BLAST table links protein annotation data to transcript sequence information and to microarray experiments data. C) Microarray experiment data section. Tables for chip information (CDF_FILE, PROBE_SET), a table for raw data (CEL_DATA), tables for normalized data (LIWONG_RESULT, MAS_RESULT, RMA_RESULT), and tables for analyzed results (EXPERIMENT, FOLD_CHANGE, LIMA_RESULT, NORMALIZE) organize the microarray data section. The PROBE_SET table links the microarray data to transcript sequence information and protein annotations data.