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Table 2 GenMAPP pathways affected by a 6-h exposure of duodenal mucosa to L. plantarum WCFS1

From: Identification of the transcriptional response of human intestinal mucosa to Lactobacillus plantarum WCFS1 in vivo

GO Name Changed Measured Total
energy pathways 14 83 92
Cytoplasm 26 514 636
oxidoreductase activity 30 318 453
MHC class II receptor activity 5 11 31
tricarboxylic acid cycle 7 22 29
fatty acid beta-oxidation 5 12 13
electron transport 27 221 346
antigen presentation\, exogenous antigen 4 10 30
antigen presentation\, endogenous antigen 4 7 13
antigen processing\, exogenous antigen via MHC class II 4 10 30
antigen processing\, endogenous antigen via MHC class I 4 10 18
endoplasmic reticulum 26 235 271
Mitochondrion 29 365 464
cytochrome-c oxidase activity 5 16 27
Microsome 14 94 118
unspecific monooxygenase activity 6 23 23
lipid metabolism 9 104 129
Glycolysis 8 39 56
Cytosol 12 126 141
mitochondrial membrane 4 10 13
inner membrane 6 26 33
hydrogen ion transporter activity 3 26 33
  1. Biological processes with relatively high numbers of gene reporters changed, based on the Gene Ontology (GO) database. The table shows the process title (GO name), the number of gene reporters changed changed (changed), measured with the microarrays (measured) and the total number of genes present in the pathway MAPP (total) (for detailed description of pathway selection, see Methods).