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Table 1 Gene dosage measurement of deleted genes in 39B3 and 39E7 Citrus mutants.

From: Characterization of hemizygous deletions in Citrus using array-Comparative Genomic Hybridization and microsynteny comparisons with the poplar genome

Unigene EST accession number (GenBank) Array-CGH Real-time PCR gene dosage
   Mutant/wt ratio P value Template 39B3 Template 39E7
aCL4690Contig1 CX295702 0.59 0.10 0.56 ± 0.02 0.99 ± 0.09
aCL1915Contig2 DY300024 0.62 0.12 0.60 ± 0.08 0.96 ± 0.04
aCL3317Contig1 DY265056 0.62 0.10 0.60 ± 0.03 0.98 ± 0.03
aC20009H03SK_c CX308429 0.63 0.10 0.50 ± 0.02 0.98 ± 0.11
aCL766Contig1 CX288964 0.65 0.13 0.56 ± 0.06 0.96 ± 0.11
aCL7097Contig1 FC868864 0.65 0.12 0.59 ± 0.04 1.15 ± 0.07
aCL2087Contig2 DY300006 0.57 0.05 1.05 ± 0.13 0.59 ± 0.11
aCL6684Contig1 DY265447 0.60 0.05 1.04 ± 0.12 0.59 ± 0.12
aCL6641Contig1 FC930062 0.62 0.05 1.14 ± 0.19 0.58 ± 0.08
aCL3902Contig1 DY267778 0.62 0.05 1.12 ± 0.10 0.64 ± 0.04
aC05139C12SK_c CX296347 0.66 0.05 1.24 ± 0.22 0.61 ± 0.05
aC01019E12SK_c CX288357 0.66 0.05 1.04 ± 0.07 0.63 ± 0.11
  1. Accession numbers and the corresponding assembled unigenes for several candidate ESTs are shown. Array-CGH data are signal ratios of mutant with respect to wild type samples for each single EST. Gene dosage was calculated through real-time PCR on 39B3 and 39E7 genomic templates. A horizontal line separates array-CGH hits of 39B3 mutant (upper) from those of the 39E7 mutant (lower).