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Table 2 Gene components of the Citrus 39B3 deletion.

From: Characterization of hemizygous deletions in Citrus using array-Comparative Genomic Hybridization and microsynteny comparisons with the poplar genome

N°

Citrus unigene

EST accession number (GenBank)

Strand

Similarity

1

aC01006D04SK_c

CX287243

-

Hypothetical protein

2

aC20006C06SK_c

CX308114

-

Ubiquitin conjugating enzyme

3

aCL3991Contig1

DY278065

-

Sterile alpha motif (SAM) domain-containing protein

4

aC18005F10Rv_c

CX305429

-

Sialyltransferase-like protein

5

aCL3317Contig1

DY265056

+

Hypothetical protein

6

aCL766Contig1

CX288964

-

ATP-dependent Clp protease, clpC homolog

7

aC01012C02SK_c

CX287682

-

Alpha-mannosidase

8

aC20009H03SK_c

CX308429

?

Mei2-like protein

9

aC16014F08SK_c

CX304691

-

Putative pol polyprotein

10

aCL6210Contig1

DY282423

-

Hypothetical protein

11

aCL8592Contig1

DY267639

-

Tudor domain-containing protein

12

aCL1065Contig1

DY282340

-

Putative amidase

13

aC32108G01EF_c

FC921733

+

Hypothetical protein

14

aCL503Contig1

CX292510

-

Respiratory burst oxidase homolog

15

aCL6269Contig1

DY263746

+

FHA domain-containing protein

16

aCL7097Contig1

FC868864

+

Putative pentatricopeptide (PPR) repeat protein

17

aCL4690Contig1

CX295702

+

ERD1 protein, chloroplast precursor

18

aCL8011Contig1

FC923875

-

Fe-superoxide dismutase

19

aIC0AAA60DF12RM1_c

DY284274

+

Poly(A)-binding protein II-like

20

aCL1848Contig1

FC875470

+

Hypothetical protein

21

aCL1915Contig2

DY300024

-

Tubulin-specific chaperone C-related

  1. Unigenes are numbered according to the ordered position of their homologues on the poplar genome. The accession numbers correspond to 39B3 candidate ESTs. The coding frame of Populus homologues follow the proposed strand (+) or the complementary reverse one (-).