From: LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice
Family | Pre-existing name | Super-family | BAC | Location(bp) | LTR size(bp) | Element size(bp) | FL | Strong hit |
---|---|---|---|---|---|---|---|---|
Mtr1 | - | Copia | AC150246.1 | 34464–46424 | 1309 | 11961 | 69 | 184 |
Mtr2 | COPIA4 | Copia | AC137553.45 | 99838–112535 | 2045 | 12698 | 11 | 29 |
Mtr3 | - | Copia | CR931729.2 | 71151–77207 | 1287 | 6057 | 5 | 22 |
Mtr4 | - | Copia | AC157648.18 | 22659–28446 | 627 | 5788 | 9 | 15 |
Mtr5 | - | Copia | AC146866.6 | 121051–127748 | 602 | 6698 | 8 | 14 |
Mtr6 | - | Copia | AC151725.26 | 4572–10226 | 797 | 5655 | 10 | 14 |
Mtr7 | - | Copia | CT967304.4 | 59158–64899 | 639 | 5742 | 7 | 13 |
Mtr8 | - | Copia | AC145027.17 | 30490–37188 | 676 | 6699 | 8 | 12 |
Mtr9 | SHACOP3 | Copia | AC159223.1 | 27730–32760 | 189 | 5031 | 6 | 11 |
Mtr10 | - | Copia | AC144482.11 | 104300–109315 | 436 | 5016 | 10 | 11 |
Mtr11 | - | Copia | AC165219.2 | 137152–141889 | 273 | 4738 | 7 | 10 |
Mtr12 | - | Copia | AC149637.11 | 7608–18418 | 1344 | 10811 | 5 | 7 |
Mtr13 | - | Copia | AC151956.5 | 65260–71649 | 203 | 6390 | 5 | 6 |
Mtr14 | - | Copia | AC144538.23 | 111496–121985 | 1394 | 10490 | 5 | 6 |
Mtr15 | COP20 | Copia | AC121235.20 | 19414–24294 | 346 | 4881 | 5 | 6 |
Mtr16 | - | Copia | CR931743.1 | 32761–38060 | 574 | 5300 | 4 | 6 |
Mtr17 | SHACOP12 | Copia | AC148291.22 | 18569–23612 | 213 | 5044 | 5 | 5 |
Mtr18 | - | Copia | AC124217.21 | 65448–73850 | 1419 | 8403 | 2 | 4 |
Mtr19 | - | Copia | AC149492.14 | 60016–72184 | 1822 | 12169 | 2 | 4 |
Mtr20 | - | Copia | AC145330.19 | 54872–60067 | 190 | 5196 | 3 | 4 |
Mtr21 | - | Copia | AC144760.27 | 99316–104667 | 597 | 5352 | 4 | 4 |
Mtr22 | COP10 | Copia | AC144618.7 | 69511–74634 | 324 | 5124 | 4 | 4 |
Mtr23 | COP6 | Copia | AC125476.30 | 52976–57511 | 212 | 4536 | 2 | 4 |
Mtr24 | - | Copia | AC148470.14 | 69233–73561 | 250 | 4329 | 3 | 3 |
Mtr25 | SHACOP4 | Copia | AC152964.13 | 48071–52925 | 276 | 4855 | 2 | 3 |
Mtr26 | - | Copia | CT573053.1 | 95022–106275 | 1608 | 11254 | 2 | 3 |
Mtr27 | - | Copia | AC140916.17 | 54292–65468 | 1434 | 11177 | 1 | 3 |
Mtr28 | - | Copia | AC174349.10 | 54241–58572 | 126 | 4332 | 3 | 3 |
Mtr29 | COP12 | Copia | AC165446.16 | 77640–82389 | 351 | 4750 | 2 | 3 |
Mtr30 | MTCOPIA2 | Copia | AC149471.1 | 84193–89268 | 186 | 5076 | 2 | 3 |
Mtr31 | - | Copia | CT573028.11 | 32334–34027 | 204 | 3059 | 1 | 3 |
Mtr32 | COP3 | Copia | AC138465.22 | 17893–22580 | 181 | 4688 | 3 | 3 |
Mtr33 | MTCOPIA1 | Copia | CT963078.3 | 62740–67719 | 269 | 4980 | 2 | 3 |
Mtr34 | SHACOP11 | Copia | AC154867.1 | 30673–35442 | 189 | 4770 | 1 | 3 |
Mtr35 | SHACOP20 | Copia | AC149038.2 | 47760–52995 | 263 | 5236 | 2 | 3 |
Mtr36 | - | Copia | AC174295.7 | 36459–41224 | 171 | 4766 | 2 | 2 |
Mtr37 | - | Copia | AC157979.11 | 69871–74887 | 249 | 5017 | 1 | 2 |
Mtr38 | - | Copia | AC171778.15 | 79794–84281 | 222 | 4488 | 2 | 2 |
Mtr39 | - | Copia | AC148470.14 | 54043–59356 | 861 | 5314 | 2 | 2 |
Mtr40 | SHACOP9 | Copia | AC175047.2 | 122584–127374 | 190 | 4791 | 2 | 2 |
Mtr41 | - | Copia | AC174336.9 | 98223–102259 | 296 | 4704 | 1 | 2 |
Mtr42 | - | Copia | AC157506.3 | 45694–50555 | 205 | 4862 | 1 | 2 |
Mtr43 | - | Copia | AC175047.2 | 115144–119648 | 256 | 4505 | 1 | 2 |
Mtr44 | - | Copia | AC183304.10 | 99523–104053 | 167 | 4531 | 2 | 2 |
Mtr45 | - | Copia | CR955009.1 | 105072–109675 | 306 | 4604 | 2 | 2 |
Mtr46 | COP14 | Copia | AC170583.6 | 12146–16446 | 171 | 4301 | 2 | 2 |
Mtr47 | COP21 | Copia | AC182817.5 | 43694–48680 | 290 | 4987 | 2 | 2 |
Mtr48 | SHACOP21 | Copia | AC161106.13 | 30630–35152 | 232 | 4523 | 2 | 2 |
Mtr49 | - | Copia | AC158377.1 | 75346–80903 | 131 | 5558 | 2 | 2 |
Mtr50 | - | Copia | AC175047.2 | 83093–87466 | 242 | 4374 | 1 | 2 |
Mtr51 | - | Copia | AC123573.41 | 60243–65229 | 213 | 4987 | 1 | 2 |
Mtr52 | - | Copia | AC135798.31 | 10206–15241 | 330 | 5036 | 1 | 2 |
Mtr53 | - | Copia | AC137831.27 | 31862–36604 | 218 | 4782 | 1 | 2 |
Mtr54 | - | Copia | CT963132.5 | 16390–21157 | 239 | 5030 | 1 | 2 |
Mtr55 | - | Copia | AC149634.8 | 14602–17988 | 206 | 3387 | 1 | 2 |
Mtr56 | SHACOP2 | Copia | AC146909.23 | 66018–71021 | 274 | 5004 | 2 | 2 |
Mtr57 | Ogre1A,B,C,D | Gypsy | AC144405.30 | 85771–104542 | 3529 | 18772 | 114 | 137 |
Mtr58 | - | Gypsy | AC162162.23 | 96896–105667 | 2127 | 8772 | 34 | 69 |
Mtr59 | Ogre2,3,4 | Gypsy | AC138465.22 | 43789–60338 | 2435 | 16550 | 31 | 37 |
Mtr60 | - | Gypsy | AC123573.41 | 34307–46826 | 1335 | 12520 | 2 | 26 |
Mtr61 | - | Gypsy | AC147430.9 | 69500–78131 | 2072 | 8632 | 1 | 10 |
Mtr62 | - | Gypsy | AC160097.27 | 42464–45517 | 2076 | 8661 | 1 | 10 |
Mtr63 | - | Gypsy | CU024896.3 | 74551–82251 | 2222 | 7701 | 3 | 6 |
Mtr64 | - | Gypsy | AC146759.29 | 74288–85435 | 1218 | 11148 | 4 | 5 |
Mtr65 | - | Gypsy | CT963073.3 | 80019–85667 | 313 | 5649 | 4 | 5 |
Mtr66 | - | Gypsy | AC150705.16 | 77136–84299 | 1943 | 7164 | 2 | 4 |
Mtr67 | - | Gypsy | AC140773.20 | 23404–37605 | 721 | 14202 | 3 | 4 |
Mtr68 | - | Gypsy | AC125481.23 | 24806–33987 | 330 | 9182 | 2 | 3 |
Mtr69 | - | Gypsy | AC157375.2 | 85556–93073 | 2125 | 7518 | 3 | 3 |
Mtr70 | - | Gypsy | AC144591.10 | 13089–29661 | 2370 | 16573 | 1 | 3 |
Mtr71 | - | Gypsy | CU024896.3 | 71754–86395 | 366 | 6936 | 1 | 2 |
Mtr72 | GYPSHAN2 | Gypsy | AC158209.13 | 42449–47637 | 409 | 5189 | 2 | 2 |
Mtr73 | - | Gypsy | AC148657.1 | 69339–74484 | 394 | 5146 | 2 | 2 |
Mtr74 | - | Gypsy | CU024896.3 | 86399–92950 | 819 | 6552 | 2 | 2 |
Mtr75 | - | TRIM | AC147537.35 | 119057–119409 | 130 | 364 | 9 | 74 |
Mtr76 | - | TRIM | CR954194.1 | 12806–16125 | 652 | 3320 | 17 | 38 |
Mtr77 | - | LARD | AC155884.2 | 39928–44595 | 2191 | 4668 | 5 | 26 |
Mtr78 | - | LARD | CT030253.10 | 41580–46389 | 921 | 5497 | 3 | 26 |
Mtr79 | - | TRIM | AC158173.13 | 32092–32698 | 190 | 607 | 5 | 25 |
Mtr80 | - | env-class | AC146719.32 | 60449–68395 | 1239 | 7947 | 5 | 20 |
Mtr81 | - | LARD | CT025840.2 | 61376–73139 | 2414 | 11764 | 2 | 14 |
Mtr82 | - | TRIM | CT009479.4 | 31485–34519 | 810 | 3035 | 7 | 10 |
Mtr83 | - | LARD | AC140022.11 | 3262–11660 | 1440 | 8399 | 2 | 10 |
Mtr84 | - | LARD | AC147201.16 | 18119–23949 | 259 | 5831 | 6 | 10 |
Mtr85 | - | TRIM | AC145219.16 | 111276–112148 | 249 | 873 | 1 | 6 |