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Figure 1 | BMC Genomics

Figure 1

From: Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Figure 1

Functional classification and relative levels, as percentages of unique transcripts in the pool, of ESTs derived from male strobili of C. japonica. We assigned 7,369 clusters by reference to databases of KOGs, TWOGs and LSEs using a BLAST-based algorithm (E-value ≤ 10-5). Designations of functional categories: A, RNA processing and modification; B, chromatin structure and dynamics; C, energy production and conversion; D, cell cycle control and mitosis; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; G, carbohydrate transport and metabolism; H, coenzyme transport and metabolism; I, lipid transport and metabolism; J, translation, ribosomal structure and biogenesis; K, transcription; L, replication and repair; M, cell wall/membrane/envelope biogenesis; N, cell motility; O, post-translational modification, protein turnover and chaperone functions; P, inorganic ion transport and metabolism; Q, secondary metabolites biosynthesis, transport and catabolism; T, signal transduction; U, intracellular trafficking, secretion, and vesicular transport; V, defense mechanisms; Y, nuclear structure; Z, cytoskeleton; R, prediction of general function only; S, function unknown; and X, unassigned.

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