Skip to main content

Table 3 Occurrence of the 25 most common Pfam domains in the predicted proteins of unique transcripts from male strobili of C. japonica

From: Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Description of Pfam domain Pfam accession Number of C. japonica transcriptsa Number of genes in A. thaliana genomeb
Protein kinase domain PF00069 132 789
Cytochrome P450 PF00067 120 242
RNA recognition motif.    
(a.k.a. RRM, RBD, or RNP domain) PF00076 78 172
NAD-dependent epimerase/dehydratase family PF01370 54 52
Zinc finger; C3HC4 type (RING finger) PF00097 48 18
GDSL-like lipase/acylhydrolase PF00657 44 107
Myb-like DNA-binding domain PF00249 43 53
WD domain; G-beta repeat PF00400 41 17
Ras family PF00071 35 73
UDP-glucuronosyl and UDP-glycosyl transferase PF00201 35 86
Short-chain dehydrogenase PF00106 34 55
Alpha/beta hydrolase fold PF00561 34 37
Sugar (and other) transporter PF00083 33 55
2OG-Fe(II) oxygenase superfamily PF03171 33 105
Core histone H2A/H2B/H3/H4 PF00125 32 46
Peroxidase PF00141 32 82
DnaJ domain PF00226 32 88
Eukaryotic aspartyl protease PF00026 31 9
Aldo/keto reductase family PF00248 30 21
Transferase family PF02458 28 55
Alcohol dehydrogenase, GroES-like domain PF08240 28 25
Mitochondrial carrier protein PF00153 27 55
Ubiquitin-conjugating enzyme PF00179 27 41
Zinc-binding dehydrogenase PF00107 26 39
AMP-binding enzyme PF00501 26 45
  1. a Protein families were identified by BLASTX searches with an E-value < 1e-10 in the Pfam database.
  2. b Protein families were assigned on the basis of data in TAIR.