Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Table 3 Occurrence of the 25 most common Pfam domains in the predicted proteins of unique transcripts from male strobili of C. japonica

Description of Pfam domain	Pfam accession	Number of C. japonica transcripts^a	Number of genes in A. thaliana genome^b
Protein kinase domain	PF00069	132	789
Cytochrome P450	PF00067	120	242
RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)	PF00076	78	172
NAD-dependent epimerase/dehydratase family	PF01370	54	52
Zinc finger; C3HC4 type (RING finger)	PF00097	48	18
GDSL-like lipase/acylhydrolase	PF00657	44	107
Myb-like DNA-binding domain	PF00249	43	53
WD domain; G-beta repeat	PF00400	41	17
Ras family	PF00071	35	73
UDP-glucuronosyl and UDP-glycosyl transferase	PF00201	35	86
Short-chain dehydrogenase	PF00106	34	55
Alpha/beta hydrolase fold	PF00561	34	37
Sugar (and other) transporter	PF00083	33	55
2OG-Fe(II) oxygenase superfamily	PF03171	33	105
Core histone H2A/H2B/H3/H4	PF00125	32	46
Peroxidase	PF00141	32	82
DnaJ domain	PF00226	32	88
Eukaryotic aspartyl protease	PF00026	31	9
Aldo/keto reductase family	PF00248	30	21
Transferase family	PF02458	28	55
Alcohol dehydrogenase, GroES-like domain	PF08240	28	25
Mitochondrial carrier protein	PF00153	27	55
Ubiquitin-conjugating enzyme	PF00179	27	41
Zinc-binding dehydrogenase	PF00107	26	39
AMP-binding enzyme	PF00501	26	45

^a Protein families were identified by BLASTX searches with an E-value < 1e-10 in the Pfam database.
^b Protein families were assigned on the basis of data in TAIR.

ISSN: 1471-2164