Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Table 4 Pfam domains found in transcripts of both A. thaliana stamen- or male gametophyte-specific genes and in transcripts from male strobili of C. japonica

Description of Pfam domain	Pfam accession number	Number of transcripts in C. japonica male strobili	Number of A. thaliana stamen- specific transcripts^a	Number of A. thaliana male gametophyte-specific transcripts^b
Protein kinase domain	PF00069	132	35	39
Plant invertase/pectin methylesterase inhibitor	PF04043	12	22	15
Protein tyrosine kinase	PF07714	19	16	12
GDSL-like lipase/acylhydrolase	PF00657	44	15	4
Pectinesterase	PF01095	14	15	11
ABC transporter	PF00005	20	13	5
Cytochrome P450	PF00067	120	13	3
Glycosyl hydrolase family 28	PF00295	10	12	11
Sodium/hydrogen exchanger family	PF00999	6	9	10
ABC-2 type transporter	PF01061	8	9	3
Oleosin	PF01277	4	9	4
No apical meristem (NAM) protein	PF02365	12	9	2
RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)	PF00076	78	8	8
Sugar (and other) transporter	PF00083	33	8	3
Calcineurin-like phosphoesterase	PF00149	25	8	6
E1-E2 ATPase	PF00122	4	7	4
Multicopper oxidase	PF00394	4	7	4
Haloacid dehalogenase-like hydrolase	PF00702	19	7	3
Multicopper oxidase	PF07731	14	7	4
Multicopper oxidase	PF07732	17	7	4
Glycosyl hydrolase family 1	PF00232	20	6	4
Pectate lyase	PF00544	5	6	3
FAD-binding domain	PF01565	6	6	2
Galactose-binding lectin domain	PF02140	5	6	4
MtN3/saliva family	PF03083	14	6	1

^a 1,145 transcripts were picked up on the basis of previous report by Wellmer et al. (2004) [29].
^b 1,274 transcripts were picked up on the basis of previous report by Honys and Twell (2004) [30].

ISSN: 1471-2164