Skip to main content

Table 4 Pfam domains found in transcripts of both A. thaliana stamen- or male gametophyte-specific genes and in transcripts from male strobili of C. japonica

From: Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Description of Pfam domain Pfam accession number Number of transcripts in C. japonica male strobili Number of A. thaliana stamen- specific transcriptsa Number of A. thaliana male gametophyte-specific transcriptsb
Protein kinase domain PF00069 132 35 39
Plant invertase/pectin methylesterase inhibitor PF04043 12 22 15
Protein tyrosine kinase PF07714 19 16 12
GDSL-like lipase/acylhydrolase PF00657 44 15 4
Pectinesterase PF01095 14 15 11
ABC transporter PF00005 20 13 5
Cytochrome P450 PF00067 120 13 3
Glycosyl hydrolase family 28 PF00295 10 12 11
Sodium/hydrogen exchanger family PF00999 6 9 10
ABC-2 type transporter PF01061 8 9 3
Oleosin PF01277 4 9 4
No apical meristem (NAM) protein PF02365 12 9 2
RNA recognition motif.     
(a.k.a. RRM, RBD, or RNP domain) PF00076 78 8 8
Sugar (and other) transporter PF00083 33 8 3
Calcineurin-like phosphoesterase PF00149 25 8 6
E1-E2 ATPase PF00122 4 7 4
Multicopper oxidase PF00394 4 7 4
Haloacid dehalogenase-like hydrolase PF00702 19 7 3
Multicopper oxidase PF07731 14 7 4
Multicopper oxidase PF07732 17 7 4
Glycosyl hydrolase family 1 PF00232 20 6 4
Pectate lyase PF00544 5 6 3
FAD-binding domain PF01565 6 6 2
Galactose-binding lectin domain PF02140 5 6 4
MtN3/saliva family PF03083 14 6 1
  1. a 1,145 transcripts were picked up on the basis of previous report by Wellmer et al. (2004) [29].
  2. b 1,274 transcripts were picked up on the basis of previous report by Honys and Twell (2004) [30].