Table 6 Identification of transcripts encoding putative transcription factors in male strobilus of C. japonica
Description of Pfam domains | Pfam accession | Number of C. japonica male strobilus transcripts |
|---|---|---|
Zinc finger, C3HC4 type (RING finger) | PF00097 | 48 |
Myb-like DNA-binding domain | PF00249 | 43 |
AP2 domain | PF00847 | 18 |
No apical meristem (NAM) protein; NAC domain | PF02365 | 12 |
Homeobox domain | PF00046 | 11 |
PHD-finger | PF00628 | 11 |
SRF-type transcription factor; MADS box | PF00319 | 10 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone | PF00808 | 7 |
Helix-loop-helix DNA-binding domain | PF00010 | 6 |
HSF-type DNA-binding | PF00447 | 6 |
B-box zinc finger | PF00643 | 6 |
Dof domain, zinc finger | PF02701 | 4 |
WRKY DNA-binding domain | PF03106 | 3 |
Response regulator receiver domain | PF00072 | 2 |
bZIP transcription factor | PF00170 | 2 |
GATA zinc finger | PF00320 | 2 |
B3 DNA binding domain; ABI3/VP1 transcription factor | PF02362 | 2 |
SBP domain | PF03110 | 2 |
GRAS family transcription factor | PF03514 | 2 |
ZF-HD protein dimerisation region | PF04770 | 2 |
CCT motif; CO-like protein | PF06203 | 2 |
Auxin response factor | PF06507 | 2 |
ARID/BRIGHT DNA binding domain | PF01388 | 1 |
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | PF02045 | 1 |
TCP family transcription factor | PF03634 | 1 |
CG-1 domain; CAMTA protein | PF03859 | 1 |
YABBY protein | PF04690 | 1 |
Plant protein of unknown function; BZR1/LAT61 family | PF05687 | 1 |
Whirly transcription factor | PF08536 | 1 |