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Table 6 Identification of transcripts encoding putative transcription factors in male strobilus of C. japonica

From: Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili

Description of Pfam domains Pfam accession Number of C. japonica male strobilus transcripts
Zinc finger, C3HC4 type (RING finger) PF00097 48
Myb-like DNA-binding domain PF00249 43
AP2 domain PF00847 18
No apical meristem (NAM) protein; NAC domain PF02365 12
Homeobox domain PF00046 11
PHD-finger PF00628 11
SRF-type transcription factor; MADS box PF00319 10
Histone-like transcription factor (CBF/NF-Y) and archaeal histone PF00808 7
Helix-loop-helix DNA-binding domain PF00010 6
HSF-type DNA-binding PF00447 6
B-box zinc finger PF00643 6
Dof domain, zinc finger PF02701 4
WRKY DNA-binding domain PF03106 3
Response regulator receiver domain PF00072 2
bZIP transcription factor PF00170 2
GATA zinc finger PF00320 2
B3 DNA binding domain; ABI3/VP1 transcription factor PF02362 2
SBP domain PF03110 2
GRAS family transcription factor PF03514 2
ZF-HD protein dimerisation region PF04770 2
CCT motif; CO-like protein PF06203 2
Auxin response factor PF06507 2
ARID/BRIGHT DNA binding domain PF01388 1
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B PF02045 1
TCP family transcription factor PF03634 1
CG-1 domain; CAMTA protein PF03859 1
YABBY protein PF04690 1
Plant protein of unknown function; BZR1/LAT61 family PF05687 1
Whirly transcription factor PF08536 1