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Table 3 Average of divergences and lengths among paralogous copies of SDs relative to genomic factors and rearrangements between human and chimpanzees.

From: The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements

Sex Chromosomes    ID
  SDs in Autosomes SDs in HSAX P-value > 98%
N 889 103   
K 0.0107 0.0076 < 0.001  
Size 41,439.50 52,887.93 0.115  
  SDs in Autosomes SDs in HSAX P-value < 92%
N 3273 261   
K 0.0958 0.0962 0.364  
Size 4,689.73 4,458.48 0.578  
  SDs in Autosomes SDs in HSAY P value > 98%
N 889 32   
K 0.0107 0.0052 < 0.001  
Size 41,439.50 ######## < 0.001  
  SDs in Autosomes SDs in HSAY P value < 92%
N 3273 132   
K 0.0958 0.0976 0.001  
Size 4,689.73 12,290.17 < 0.001  
Telomeres (10 Mb)    ID
  SDs not in telomeres SDs in Telomeres P-value > 98%
N 719 170   
K 0.0105 0.0115 0.052  
Size 44,040.90 30,437.11 0.01  
  SDs not in telomeres SDs in Telomeres P-value < 92%
N 2831 442   
K 0.0958 0.0958 0.874  
Size 4,746.56 4,325.72 0.224  
Centromere (5 Mb)    ID
  SDs not in Centromeres SDs in Centromeres P-value > 98%
N 572 147   
K 0.0106 0.01 0.316  
Size 36,111.33 74,896.07 < 0.001  
  SDs not in Centromeres SDs in Centromeres P-value < 92%
N 2096 735   
K 0.0959 0.0953 0.029  
Size 3,908.13 7,137.51 < 0.001  
HSA19     ID
  SDs in other autosomes SDs in HSA19 P-value > 98%
N 561 11   
K 0.0105 0.0126 0.32  
Size 36,600.01 11,188.90 0.139  
  SDs in other autosomes SDs in HSA19 P-value < 92%
N 2029 67   
K 0.0959 0.0958 0.906  
Size 3,875.29 4,902.67 0.141  
Rearranged Chromosomes    ID
  SDs in Colinear chr SDs in Rearranged Chr P-value > 98%
N 208 353   
K 0.0114 0.01 0.009  
Size 25,385.48 43,208.01 < 0.001  
  SDs in Colinear chr SDs in Rearranged Chr P-value < 92%
N 890 1139   
K 0.0959 0.096 0.902  
Size 3,791.72 3,940.59 0.534  
Inside rearranged regions versus Outside rearranged regions, without HSA2 ID
  SDs Outside rearranged regions SDs Inside rearranged regions P-value > 98%
N 216 87   
K 0.0104 0.0096 0.347  
Size 40,400.12 55,156.56 0.058  
  SDs Outside rearranged regions SDs Inside rearranged regions P-value < 92%
N 715 267   
K 0.096 0.0957 0.586  
Size 3,879.46 4,868.64 0.016  
Inversions detected in (Newman et al 2005) vs rest of chromosomes ID
  SDs Outside Inversion SDs Inside Inversion P-value > 98%
N 541 20   
K 0.0104 0.0131 0.063  
Size 35,170.62 75,264.90 0.003  
  SDs Outside Inversion SDs Inside Inversion P-value < 92%
N 1977 52   
K 0.0959 0.0986 0.004  
Size 3,853.94 4,686.98 0.281  
Breakpoints versus inverted chromosomes (excluding HSA2) ID
  SDs rest of Chr SDs in BKP P-value > 98%
N 286 17   
K 0.0103 0.008 0.135  
Size 44,189.30 52,171.11 0.611  
  SDs rest of Chr SDs in BKP P-value < 92%
N 953 29   
K 0.096 0.0941 0.15  
Size 4,159.23 3,792.82 0.748  
  1. Divergence (K) is calculated as the number of substitution per site between the two duplication alignments. Length (Size) corresponds to the aligned basepairs. P-values are calculated by means of permutation test (see Material and Methods).