The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements

Table 5 Average of inter-divergences in human SDs and chimpanzee SDs in individual chromosomes relative to major rearrangements between human and chimpanzee.

Hs Chr	Human SDs					Chimp SDs
	Outside rearranged regions	Inside rearranged regions	P-value	N _out	N _in	Outside rearranged regions	Inside rearranged regions	P-value	N _out	N _in	Lineage of the rearrangement
HSA1	0.0209	0.0070	0.043	106	1	0.0203			105	0	HUMAN
HSA4	0.0246	0.0263	0.608	17	13	0.0247			13	0	CHIMP
HSA5	0.0226	0.0170	0.116	10	16	0.0197	0.0161	0.065	10	57	CHIMP
HSA9	0.0230	0.0246	0.440	35	26	0.0184	0.0232	< 0.001	49	38	CHIMP
HSA12	0.0201	0.0243	0.286	9	7	0.0216	0.0190	0.875	1	8	CHIMP
HSA15	0.0251	0.0239	0.661	41	7	0.0224	0.0239	0.418	48	10	CHIMP
HSA16	0.0188	0.0319	0.008	41	2	0.0181	0.0413	0.008	68	1	CHIMP
HSA17	0.0215	0.0198	0.427	16	40	0.0225	0.0206	0.352	17	46	CHIMP
HSA18	0.0245			5	0	0.0252			1	0	HUMAN
TOTAL (without HSA2)	0.0218	0.0219	0.934	*280*	*112*	0.0202	0.0199	0.693	*312*	*160*

ISSN: 1471-2164