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Table 1 Genome summary of P. zucineum Strain HLK1T

From: Complete genome of Phenylobacterium zucineum – a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562

Genomic Element

 

Chromosome

plasmid

Length (bp)

 

3,996,255

382,976

GC content (%)

 

71.35

68.54

Proteins

 

3, 534

327

 

Coding region of genome (%)

88.85%

81.94%

 

Proteins with known or predicted function

2,394(67.75%)

201(61.47%)

 

Conserved hypothetical proteins

560(15.84%)

25(7.65%)

 

Hypothetical proteins

580(16.41%)

101(30.88%)

rRNA operon

 

1

0

tRNAs

 

42

0

Proteins in each

[J] Translation, ribosomal structure and biogenesis

185 (5.24%)

3 (1.21%)

COG category

[K] Transcription

210 (5.94%)

22 (8.91%)

 

[L] Replication, recombination and repair

139 (3.93%)

23 (9.31%)

 

[D] Cell cycle control, cell division, chromosome partitioning

27 (0.76%)

0

 

[V] Defense mechanisms

51 (1.44%)

3 (1.21%)

 

[T] Signal transduction mechanisms

166 (4.7%)

24 (9.72%)

 

[M] Cell wall/membrane/envelope biogenesis

195 (5.52%)

15 (6.07%)

 

[N] Cell motility

62 (1.75%)

4 (1.62%)

 

[U] Intracellular trafficking, secretion, and vesicular transport

96 (2.72%)

13 (5.26%)

 

[O] Posttranslational modification, protein turnover, chaperones

151 (4.27%)

32 (12.96%)

 

[C] Energy production and conversion

188 (5.32%)

16 (6.48%)

 

[G] Carbohydrate transport and metabolism

161 (4.56%)

15 (6.07%)

 

[E] Amino acid transport and metabolism

293 (8.29%)

5 (2.02%)

 

[F] Nucleotide transport and metabolism

58 (1.64%)

3 (1.21%)

 

[H] Coenzyme transport and metabolism

116 (3.28%)

3 (1.21%)

 

[I] Lipid transport and metabolism

215 (6.09%)

12 (4.86%)

 

[P] Inorganic ion transport and metabolism

223 (6.31%)

24 (9.72%)

 

[Q] Secondary metabolites biosynthesis, transport and catabolism

152(4.3%)

9 (3.64%)

 

[R] General function prediction only

444 (12.57%)

28 (11.34%)

 

[S] Function unknown

307 (8.69%)

20 (8.10%)