Complete genome of Phenylobacterium zucineum – a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562

Table 2 Repetitive elements in the P. zucineum genome

Repeat ID	Length bp	DR¹	Number of copies		Position of insertion		Identity (%)	Coding information
			Complete²	Partial	Chromosome	Plasmid
Repeat01³	2,587	7	3	1	0	4	>99	Transposase
Repeat02⁴	1,262	3	3	1	2	2	100	Transposase
Repeat03⁵	1,392	NA	4	2	4	2	100	Transposase
Repeat04⁶	1,257	NA	10	0	7	3	100	Transposase
Repeat05	1,554	NA	2	0	2	0	>98	Hypothetical protein
Repeat06	1,136	NA	2	0	2	0	>90	Isovaleryl-CoA dehydrogenase
Repeat07	1,077	NA	2	0	2	0	>98	2-nitropropane dioxygenase
Repeat08	≈130	NA	13	0	13	0	>90	Noncoding repeats

¹Size in base pairs of the consensus and the direct repeat (DR) generated by insertion into the genome target site.
²A copy is complete if the length of the repeat is ≥ 90% of the consensus, otherwise, the copy is partial.
³One complete copy which harbors a 7 bp direct repeat (TCCTAAC) that disrupts the VirD4.
⁴The partial copy is located in the plasmid.
⁵Two partial copies are located in the chromosome, of which a "partial" copy with full length is inserted by a copy of repeat04.
⁶repeats 01–04 are IS elements

ISSN: 1471-2164