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Table 4 Windows exhibiting the highest imperfection in the genome.

From: A human genome-wide library of local phylogeny predictions for whole-genome inference problems

central SNPa

chr.b

pos.c

i CEU d

i YRI e

sequence context

rs2486545

1

240569616

15

17

intergenic region

rs10174559

2

241396766

11

16

intron of KIF1A kinesin family member 1A

rs11683248

2

29360497

11

14

intron of ALK anaplastic lymphoma kinase (Ki-1)

rs7405052

16

84225446

7

17

intron of KIAA0182

rs12918736

16

84226491

7

17

intron of KIAA0182

rs10926263

1

236937389

8

16

intron of FMN2 formin 2

rs6037439

20

296188

17

7

intergenic region

rs7173687

15

24667811

9

15

intron of GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5

rs2493310

1

3317579

9

15

intron of PRDM16 PR domain containing 16

rs8045380

16

84226877

10

14

intron of KIAA0182

  1. This table identifies those windows with combined imperfection scores above 23.
  2. (a) refSNP ID of the central SNP of the window
  3. (b) chromosome on which the window is found
  4. (c) genomic map position of the central SNP
  5. (d) imperfection in the CEU population
  6. (e) imperfection in the YRI population