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Table 4 Windows exhibiting the highest imperfection in the genome.

From: A human genome-wide library of local phylogeny predictions for whole-genome inference problems

central SNPa chr.b pos.c i CEU d i YRI e sequence context
rs2486545 1 240569616 15 17 intergenic region
rs10174559 2 241396766 11 16 intron of KIF1A kinesin family member 1A
rs11683248 2 29360497 11 14 intron of ALK anaplastic lymphoma kinase (Ki-1)
rs7405052 16 84225446 7 17 intron of KIAA0182
rs12918736 16 84226491 7 17 intron of KIAA0182
rs10926263 1 236937389 8 16 intron of FMN2 formin 2
rs6037439 20 296188 17 7 intergenic region
rs7173687 15 24667811 9 15 intron of GABRA5 gamma-aminobutyric acid (GABA) A receptor, alpha 5
rs2493310 1 3317579 9 15 intron of PRDM16 PR domain containing 16
rs8045380 16 84226877 10 14 intron of KIAA0182
  1. This table identifies those windows with combined imperfection scores above 23.
  2. (a) refSNP ID of the central SNP of the window
  3. (b) chromosome on which the window is found
  4. (c) genomic map position of the central SNP
  5. (d) imperfection in the CEU population
  6. (e) imperfection in the YRI population