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Table 3 Summary of mSFP calls for the 14 chromosomes among five parasite isolates

From: Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray

Isolate Ch1 Ch2 Ch3 Ch4 Ch5 Ch6 Ch7 Ch8 Ch9 Ch10 Ch11 Ch12 Ch13 Ch14 Total
0000* 35727 54790 67238 67463 90602 85998 85713 86826 98064 190050 223105 212037 340227 231400 1869240
0001 247 615 656 896 429 506 655 524 635 765 606 1092 1486 1337 10449
0010 209 116 130 331 304 211 252 313 1529 54 390 245 393 244 5121
0011 180 41 49 244 55 137 143 269 121 173 98 165 156 76 1907
0100 349 1636 348 688 537 344 683 527 497 761 829 1224 890 755 10068
0101 248 556 73 479 279 203 336 268 193 191 178 315 164 137 3620
0110 175 165 193 491 173 267 384 199 227 506 223 488 478 222 4191
0111 296 213 235 551 941 501 406 513 389 543 378 866 597 397 6826
1000 300 278 359 563 345 467 580 598 511 1125 687 762 1287 994 8856
1001 138 241 123 427 138 401 625 315 315 621 484 342 490 327 4987
1010 179 75 70 219 55 81 117 136 49 182 275 106 209 162 1915
1011 243 288 144 533 47 593 447 438 369 363 282 348 684 316 5095
1100 123 179 166 309 87 141 343 143 78 204 177 272 424 142 2788
1101 477 271 356 860 240 1180 134 495 356 496 476 880 547 207 7975
1110 363 197 340 731 222 306 628 433 133 408 402 560 644 222 5589
1111 2507 1924 1607 3829 968 3720 4215 3149 2816 3984 3072 3948 3809 2152 41700
Total 6034 6795 4849 11151 4820 9058 10948 8320 8218 10776 8557 11613 12258 7690 121087
  1. *Parasite isolate order is 7G8, Dd2, FCR3, and HB3. For example, '1000' indicates the numbers of unique alleles for 7G8. A '0' indicates that a parasite has the same allele as that of 3D7 (0), and '1' indicates a different allele (a mSFP). The numbers in the first row were positions with probes but no SFP were called (no polymorphism). These numbers were not counted in the total calculation. The counts were based on a signal cutoff value of 5.0. Note these calls were mSFP and were different from those defined previously, where each probe was defined as an independent SFP[28].
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