|
Isolate
|
Ch1
|
Ch2
|
Ch3
|
Ch4
|
Ch5
|
Ch6
|
Ch7
|
Ch8
|
Ch9
|
Ch10
|
Ch11
|
Ch12
|
Ch13
|
Ch14
|
Total
|
|---|
|
0000*
|
35727
|
54790
|
67238
|
67463
|
90602
|
85998
|
85713
|
86826
|
98064
|
190050
|
223105
|
212037
|
340227
|
231400
|
1869240
|
|
0001
|
247
|
615
|
656
|
896
|
429
|
506
|
655
|
524
|
635
|
765
|
606
|
1092
|
1486
|
1337
|
10449
|
|
0010
|
209
|
116
|
130
|
331
|
304
|
211
|
252
|
313
|
1529
|
54
|
390
|
245
|
393
|
244
|
5121
|
|
0011
|
180
|
41
|
49
|
244
|
55
|
137
|
143
|
269
|
121
|
173
|
98
|
165
|
156
|
76
|
1907
|
|
0100
|
349
|
1636
|
348
|
688
|
537
|
344
|
683
|
527
|
497
|
761
|
829
|
1224
|
890
|
755
|
10068
|
|
0101
|
248
|
556
|
73
|
479
|
279
|
203
|
336
|
268
|
193
|
191
|
178
|
315
|
164
|
137
|
3620
|
|
0110
|
175
|
165
|
193
|
491
|
173
|
267
|
384
|
199
|
227
|
506
|
223
|
488
|
478
|
222
|
4191
|
|
0111
|
296
|
213
|
235
|
551
|
941
|
501
|
406
|
513
|
389
|
543
|
378
|
866
|
597
|
397
|
6826
|
|
1000
|
300
|
278
|
359
|
563
|
345
|
467
|
580
|
598
|
511
|
1125
|
687
|
762
|
1287
|
994
|
8856
|
|
1001
|
138
|
241
|
123
|
427
|
138
|
401
|
625
|
315
|
315
|
621
|
484
|
342
|
490
|
327
|
4987
|
|
1010
|
179
|
75
|
70
|
219
|
55
|
81
|
117
|
136
|
49
|
182
|
275
|
106
|
209
|
162
|
1915
|
|
1011
|
243
|
288
|
144
|
533
|
47
|
593
|
447
|
438
|
369
|
363
|
282
|
348
|
684
|
316
|
5095
|
|
1100
|
123
|
179
|
166
|
309
|
87
|
141
|
343
|
143
|
78
|
204
|
177
|
272
|
424
|
142
|
2788
|
|
1101
|
477
|
271
|
356
|
860
|
240
|
1180
|
134
|
495
|
356
|
496
|
476
|
880
|
547
|
207
|
7975
|
|
1110
|
363
|
197
|
340
|
731
|
222
|
306
|
628
|
433
|
133
|
408
|
402
|
560
|
644
|
222
|
5589
|
|
1111
|
2507
|
1924
|
1607
|
3829
|
968
|
3720
|
4215
|
3149
|
2816
|
3984
|
3072
|
3948
|
3809
|
2152
|
41700
|
|
Total
|
6034
|
6795
|
4849
|
11151
|
4820
|
9058
|
10948
|
8320
|
8218
|
10776
|
8557
|
11613
|
12258
|
7690
|
121087
|
- *Parasite isolate order is 7G8, Dd2, FCR3, and HB3. For example, '1000' indicates the numbers of unique alleles for 7G8. A '0' indicates that a parasite has the same allele as that of 3D7 (0), and '1' indicates a different allele (a mSFP). The numbers in the first row were positions with probes but no SFP were called (no polymorphism). These numbers were not counted in the total calculation. The counts were based on a signal cutoff value of 5.0. Note these calls were mSFP and were different from those defined previously, where each probe was defined as an independent SFP[28].
