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Table 1 P450s in the fungal kingdom

From: Fungal cytochrome P450 database

Speciesa

# of ORFs

# of P450s

Ratio (%)

Sourced

Ref

Fungi (Kingdom)

     

   Ascomycota (Phylum)

     

Pezizomycotina (Subphylum)

     

Botrytis cinerea

16,448

136

0.83

BI

-

Sclerotinia sclerotiorum

14522

96

0.66

BI

-

Aspergillus clavatus

9,121

97

1.06

BI

[15, 16]

Apsergillus flavus

12,604

159

1.26

BI

[17]

Aspergillus fischerianus c

10,403

99

0.95

BI

[16]

Aspergillus fumigatus A1163

9,929

76

0.77

TIGR

[16]

Aspergillus fumigatus Af293

9,887

80

0.81

TIGR

[18]

Aspergillus nidulans

10,701

122

1.14

BI

[19]

Aspergillus niger ATCC1015

11,200

154

1.38

JGI

-

Aspergillus niger CBS513.88

14,086

151

1.07

NCBI

[20]

Aspergillus oryzae

12,063

163

1.35

DOGAN

[21]

Aspergillus terreus

10,406

125

1.20

BI

[15]

Coccidioides immitis RS

10,457

45

0.43

BI

-

Coccidioides immitis H538.4

6,991

44

0.63

BI

-

Coccidioides immitis RMSCC 2394

7,162

44

0.61

BI

-

Coccidioides immitis RMSCC 3703

6,935

43

0.62

BI

-

Histoplasma capsulatum G186AR

7,454

22

0.30

WGSC

-

Histoplasma capsulatum G217B

8,038

46

0.57

WGSC

-

Histoplasma capsulatum NAm1

9,349

42

0.45

BI

-

Uncinocarpus reesii

7,798

41

0.53

BI

-

Chaetomium globosum c

11,124

92

0.83

BI

-

Fusarium graminearum PH-1

13,321

118

0.89

BI

[22]

Fusarium graminearum GZ3639b

6,694

45

0.67

BI

[22]

Fusarium oxysporum

17,608

170

0.97

BI

-

Fusarium verticillioides

14,199

129

0.91

BI

-

Fusarium solani

15,707

162

1.03

JGI

-

Magnaporthe oryzae

12,841

139

1.08

BI

[23]

Neurospora crassa

9,842

43

0.40

BI

[24]

Podospora anserine

10,596

115

1.09

IGM

[25]

Trichoderma reesei

9,129

73

0.80

JGI

[26]

Trichoderma virens

11,643

120

1.03

JGI

-

Mycosphaerella graminicola

11,395

81

0.71

JGI

-

Mycosphaerella fijiensis

10,313

94

0.91

JGI

-

Stagonospora nodorum

16,597

153

0.92

BI

[27]

Saccharomycotina (Subphylum)

     

Candida albicans SC5314

6,090

10

0.16

SGTC

[28, 29]

Candida albicans WO-1

6,157

10

0.16

BI

-

Candida dubliniensis

6,027

10

0.17

SI

-

Candida glabrata

5,165

3

0.06

CBS

[30]

Candida guilliermondii

5,920

10

0.17

BI

-

Candida lusitaniae

5,941

9

0.15

BI

-

Candida parasilosis

5,733

14

0.24

BI

-

Candida tropicalis

6,258

12

0.19

BI

-

Debaryomyces hansenii

6,354

9

0.14

CBS

[30]

Ashbya gossypii

4,717

3

0.06

NCBI

[31]

Kluyveromyces lactis

5,327

5

0.09

GS

[30]

Kluyveromyces polysporus

5,367

4

0.07

SIG

[32]

Kluyveromyces waltii

4,935

3

0.06

BI

[33]

Lodderomyces elongisporus

5,796

10

0.17

BI

-

Pichia stipitis

5,839

10

0.17

JGI

[34]

Saccharomyces bayanus MCYC 623

9,385

3

0.03

BI

[33]

Saccharomyces bayanus 623-6C YM4911

4,966

3

0.06

WGSC

[35]

Saccharomyces castellii

4,677

3

0.06

VBI

[35]

Saccharomyces cerevisiae S288C

5,898

3

0.06

SGD

[36]

Saccharomyces cerevisiae RM11-1a

5,366

3

0.06

BI

-

Saccharomyces cerevisiae YJM789

5,903

3

0.05

SI

[37]

Saccharomyces kudriavzevii

3,768

3

0.08

VBI

[33]

Saccharomyces kluyveri

2,968

3

0.10

WGSC

[35]

Saccharomyces mikatae

9,016

3

0.03

BI

[33]

Saccharomyces mikatae

3,100

1

0.03

WGSC

[35]

Saccharomyces paradoxus

8,939

3

0.03

BI

[33]

Yarrowia lipolytica

6,524

17

0.26

CBS

[30]

Taphrinomycotina (Subphylum)

     

Pneumocystis carinii b,c

4,062

2

0.05

SI

-

Schizosaccharomyces pombe

5,005

2

0.04

GeneDB

[38]

Schizosaccharomyces japonicus

5,172

2

0.04

BI

-

   Basidiomycota (Phylum)

     

Agricomycotina (Subphylum)

     

Postia placenta

17,173

353

2.06

JGI

-

Phanerochaete chrysosporium

10,048

145

1,14

JGI

[39]

Coprinus cinereus

13,544

138

1.02

BI

-

Laccaria bicolor

20,614

91

0.44

JGI

[40]

Cryptococcus neoformans Serotype A

7,302

6

0.08

BI

-

Cryptococcus neoformans Serotype B

6,870

6

0.09

NCBI

-

Cryptococcus neoformans Serotype D B3501-A

6,431

5

0.08

SGTC

[41]

Cryptococcus neoformans Serotype D JEC21

6,475

5

0.08

SGTC

[41]

Pucciniomycotina (Subphylum)

     

Sporobolomyces roseus

5,536

7

0.13

JGI

-

Puccinia graminis

20,567

18

0.09

BI

-

Ustilaginomycotina (Subphylum)

     

Malassezia globosa

4,286

6

0.14

PGC

[42]

Ustilago maydis 521

6,689

21

0.33

BI

[43]

Ustilago maydis FB1

6,950

21

0.30

BI

[43]

Chytridiomycota (Phylum)

     

Batrachochytrium dendrobatidis JEL423

8,818

9

0.10

BI

-

Mucoromycotina (Subphylum incertae sedis )

     

Rhizopus oryzae

17,467

50

0.29

BI

-

Phycomyces blakesleeanus

14,792

56

0.38

JGI

-

Microsporidia (Phylum)

     

Antonospora locustae b,c

2,606

0

0.00

JBPC

-

Encephalitozoon cuniculi

1,996

0

0.00

GS

[44]

Stramenopila (Kingdom)

     

Peronosporomycota (Phylum)

     

Phytophthora infestans c

22,658

29

0.13

BI

-

Phytophthora sojae

19,276

35

0.18

JGI

[45]

Phytophthora ramorum

16,066

33

0.21

JGI

[45]

Hyaloperonospora parasitica

14,789

9

0.06

VBI

-

Total

797,891

4,538

0.57

  
  1. aList of species archived in FCPD sorted by a recently established taxonomic scheme [46].
  2. bThese genomes have not been completed sequenced.
  3. cInsufficient exon/intron information
  4. dSGTC, Stanford Genome Technology Center; SI, Sanger Institute; CBS, Center For Biological Sequences; BI, Broad Institute; WGSC, Washington University Genome Sequencing Center; JGI, DOE Joint Genomic Institute; DOGAN, Database Of the Genomes Analyzed at Nite; GS, Genoscope; VGI, Virginia Bioinformatics Institute; BCM, Baylor College of Medicine; JBPC, Josephine Bay Paul Center for Comparative Molecular Biology and Evolution; SIG, Trinity College Dublin, Smurfit Institute of Genetics; IGM, Instituté de Génétique et Microbiologie; PGC, Procter & Gamble Co.