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Table 1 The candidate 10 genes and 23 putative Sox10 binding sites tested by ChIP assay.

From: Identification of direct regulatory targets of the transcription factor Sox10 based on function and conservation

gene symbol RefSeq ID target cis element chromosome start end Location primer pair #
Cmkor1 NM_053352 tttATTGTtctc 9 89344237 89344250 Intron 1
   agcACAATgg 9 89346538 89346547 Intron 2
Gda NM_031776 ttgACAATtt 1 224640748 224640757 Intron 3
PLP NM_030990 cctATTGTgttt X 124488088 124488101 5'enhancer 4
   taATTGTttt X 124492945 124492954 intron 5
   ctATTGTata X 124493179 124493188 Intron 6
   gaATTGTgtg X 124493238 124493247 Intron 6
   ggtACAATtg X 124493249 124493258 Intron 6
   ccATTGTtta X 124494810 124494819 Intron 7
Sox10 NM_019193 agATTGTcca 7 117150489 117150498 5'enhancer 8
   caATTGTctg 7 117150400 117150409 5'enhancer 8
SOD3 NM_012880 ccATTGTgcc 14 63387776 63387785 5'enhancer 9
Erbb3 NM_017218 tcATTGTggg 7 1874401 1874410 Intron 10
   gacACAATag 7 1874335 1874344 Intron 10
Ptn NM_017066 caATTGTtgg 4 64147810 64147819 Intron 11
   cacACAATag 4 64147702 64147711 Intron 11
   taATTGTgag 4 64136510 64136519 Intron 12
   atATTGTaac 4 64127690 64127699 Intron 13
   attACAATaa 4 64126376 64126385 Intron 14
Ngfr NM_012610 tggACAATgg 10 84280255 84280264 Intron 15
   cagACAATgg 10 84280237 84280246 Intron 15
Gzmb NM_138517 cgATTGTgat 15 35199893 35199902 5'enhancer 16
Gas7 NM_053484 ccATTGTatg 10 54304002 54304011 Intron 17
  1. The number in the last column indicates the primer pair used to test each site by ChIP assay (see additional data file 3).