Table 2 SNP panel in sheep MHC class III region
From: A map of the class III region of the sheep major histocompatibilty complex
Locus Name | GenBank ID | Mutation | Position | SEQUENCE |
|---|---|---|---|---|
APOMS1 | EF139192 | G/A | 1423 | TTGGCAGGAC(G/A)GCCAGCTCAT |
BAT2S1 | EF197828 | C/T | 1441 | AAACAGCAAG(C/T)CCAAGCCCTA |
BAT2S2 | EF197828 | A/G | 1101 | TCCCTGCTCC(A/G)CCAAGGGCCT |
BAT5S1 | EF197830 | A/G | 225 | GCTTGGGGAC(A/G)GGGGTACCCT |
BFS1 | EF446375 | C/T | 2922 | CACTCCATGA(C/T)CTCTCACTCA |
BFS2 | EF446375 | C/T | 4222 | CCATTCTGAG(C/T)TTCTGCAGTG |
C2S1 | EF446374 | A/G | 1468 | CACGGTGAGC(A/G)CTGGACTCAG |
C2S2 | EF446374 | G/C | 1809 | CTAGCAAGCT(G/C)TGCCCTGGGC |
C2S3 | EF446374 | C/T | 1394 | GGCCTATCTG(C/T)CTCCCCTGCA |
C2S4 | EF446374 | C/T | 320 | GAGCGGAGGG(C/T)ATCCTGCTCA |
G6bS1 | EF197833 | C/T | 1396 | AGGAGTTGAG(C/T)GACCTACATT |
LTAS1 | DU475543.1 | A/G | 259 | CAGGTGGGAG(A/G)GTATATACTG |
LTAS2 | DU475543.1 | C/T | 486 | CCTTCTCCTC(C/T)GAATTTACTG |
LTAS3 | DU475543.1 | A/G | 254 | TGTCCCAGGT(A/G)GGAGGGTATA |
JQMSH5S1 | EF197839 | A/T | 3781 | TATTTTAGAA(A/T)GAAGAATAGT |
JQMSH5S2 | EF197839 | A/G | 3844 | ATGCAATGCT(A/G)CAGGTTAAAG |
JQMSH5S3 | EF197839 | C/T | 2169 | GACAAAATTA(C/T)GGAATGTTCC |
JQMSH5S4 | EF197839 | A/G | 2832 | TTCTGCTCCA(A/G)TTGGTCCATG |
JQNG22S1 | EF197840 | A/G | 926 | GTACGGTGCC(A/G)GAGCTCCCAG |
TNXBS1 | EF197845 | C/T | 1293 | CTCTACCTGT(C/T)TCTCAGAACC |
TNXBS2 | EF197845 | A/G | 1324 | GAAGAAATCG(A/G)AGCAGAGCCT |
TNFaS1 | EF446377 | A/G | 2408 | GCCTCCTTTT(A/G)CTTATGTTTT |
TNFaS2 | EF446377 | A/G | 2149 | CTTCCTGCCA(A/G)TGTTTCCAGA |
TNFaS3 | EF446377 | A/G | 1590 | CTGCCATCAA(A/G)AGCCCTTGCC |
TNFaS4 | EF446377 | A/G | 1389 | GGGGGGACTC(A/G)TATGCCAATG |
TNFaS5 | EF446377 | C/T | 1951 | GCCTGGACAA(C/T)GGGCCACCAA |