Skip to main content

Table 2 UCR elements used in this Study

From: Comparative genomics of small RNA regulatory pathway components in vector mosquitoes

GATA

See Additional File 4

[78, 79]

NFkB1

GGKGATYYAC

Aedine consensus [72]

NFkB2

KGGGAWHMMM

Anopheline consensus [72]

NFkB4

KGKGAWHHMM

Cross-species consensus

NFkB7

GGGAWHM

Subset of NFkB-related TFBSs, analyzed with higher stringency

JAK-STAT

TTCTAGGAA, TTTCTAAGAAA

[69, 95]

BR-C Z1

TAAWWRACAARW

[96]

BR-C Z2

TTWWCTATTT

[96]

BR-C Z3

WAAACWWRW

[96]

BR-C Z4

RKAAASA

[96]

M1

MSMYCCACCCMCTCC

Aedes-specific

M2

SMCWCCCACCYMCYC

Aedes-specific

M7

RCMRCARCARCARCA

Anopheles-specific

M8

SCRMMRCAGCARCAGCARCM

Anopheles-specific

M9

KTGTGTGTGTGTKYG

Anopheles-specific

M12

AAGAATTTAAGAATT

Culex-specific

M13

TTYTTAAATTYTYAA

Culex-specific

M17

AACTTTTT

Culex-specific

M19

CCCMCCCCCCCCCYYY

miRNA pathway-specific

M21

SRGBSGCSGKRSSGG

miRNA pathway-specific

M24

CCRCMRCARCMGCWRCMRCM

siRNA pathway-specific

M26

TYTGAG

siRNA pathway-specific

M30

CGAGCKRCTSSRASYWGGTT

PIWI pathway-specific

  1. IUPAC consensus codes used, wherein "K" is T or G; "Y" is T or C; "W" is T or A; "R" is A or G; "S" is C or G; "M" is C or A; "H" is A, T, or C; "V" is A, C or G; "B" is C, T, or G; "D" is A, T, or G.