Table 1 Genes showing differential expression of large magnitude (p-value < 0.01 and estimated FC > 10) at 48 hpi as compared to uninfected pigs.
affyID | Gene Name | Human Refseq ID | p value | 8 h/C | 24 h/C | 48 h/C | 21 d/C |
|---|---|---|---|---|---|---|---|
Ssc.2381.1.A1_at | S100A9 | NM_002965 | 0.0004 | 2.25 | 9.81 | 226.80 | 5.90 |
Ssc.719.1.S1_a_at | CXCL5 | NM_002993 | 0.0015 | 3.09 | 6.28 | 102.29 | 4.41 |
Ssc.16008.1.S1_at | FCN2 | NM_002003 | 0.0041 | 1.36 | 7.90 | 52.98 | 1.40 |
Ssc.17573.1.S1_at | IL1B | NM_000576 | 0.0000 | 1.16 | 3.70 | 39.31 | 1.15 |
Ssc.8162.1.S1_at | PTX3 | NM_002852 | 0.0009 | -1.40 | 2.61 | 39.10 | 1.05 |
Ssc.9117.1.S1_at | S100A12 | NM_005621 | 0.0040 | 1.46 | 4.29 | 38.85 | 4.89 |
Ssc.16250.1.S2_at | IL1RN | NM_173841 | 0.0002 | 1.20 | 6.20 | 33.79 | 1.81 |
Ssc.658.1.S1_at | IL8 | NM_000584 | 0.0002 | 2.13 | 3.17 | 31.80 | 2.33 |
Ssc.4093.1.A1_at | IFNG | NM_000619 | 0.0000 | -1.27 | 1.26 | 28.83 | -1.19 |
Ssc.13769.1.S1_at | LTF | NM_002343 | 0.0024 | 2.55 | 3.47 | 26.31 | 1.89 |
Ssc.9114.1.S1_at | STEAP4 | NM_024636 | 0.0011 | -1.25 | 2.92 | 20.85 | 2.83 |
Ssc.11009.1.A1_at | Â | Â | 0.0033 | -1.12 | 5.59 | 20.81 | 2.95 |
Ssc.4871.1.S1_at | CXCL2 | NM_002089 | 0.0000 | 1.17 | 9.02 | 17.40 | 1.48 |
Ssc.300.1.S1_at | SLC11A1 | NM_000578 | 0.0004 | 1.32 | 2.49 | 16.79 | 1.82 |
Ssc.16228.1.S1_at | PPBP | NM_002704 | 0.0003 | -1.52 | -1.38 | 16.17 | -1.06 |
Ssc.5053.1.S1_at | CD163 | NM_203416 | 0.0002 | 2.01 | 1.75 | 16.02 | 4.69 |
Ssc.27433.1.S1_at | TGM1 | NM_000359 | 0.0003 | 1.97 | 3.38 | 14.78 | 1.56 |
Ssc.30887.1.S1_at | TNFAIP6 | NM_007115 | 0.0009 | -9.58 | 2.42 | 14.44 | 1.01 |
Ssc.30027.1.A1_at | Â | Â | 0.0020 | 1.64 | 2.26 | 14.30 | 1.18 |
Ssc.18261.1.S1_at | PSTPIP2 | NM_024430 | 0.0000 | -1.02 | 1.68 | 13.30 | 2.20 |
Ssc.16151.1.S1_at | CSF3 | NM_172219 | 0.0032 | 1.22 | 2.78 | 13.15 | -1.15 |
Ssc.62.2.S1_a_at | IL6 | NM_000600 | 0.0005 | 1.18 | 3.03 | 13.12 | 1.41 |
Ssc.21663.1.A1_at | LIPG | NM_006033 | 0.0001 | 1.35 | 2.94 | 12.95 | 1.78 |
Ssc.5743.1.S1_a_at | HK3 | NM_002115 | 0.0002 | 1.04 | 1.94 | 11.64 | 1.32 |
Ssc.24282.1.S1_at | CXCL1 | NM_001511 | 0.0000 | -1.34 | 2.26 | 11.40 | 1.26 |
Ssc.6797.1.S1_at | STXBP1 | NM_003165 | 0.0000 | 1.48 | 2.13 | 11.35 | 1.83 |
Ssc.11784.1.S1_at | TIMP1 | NM_003254 | 0.0000 | 1.15 | 2.44 | 11.27 | 1.23 |
Ssc.7314.1.A1_at | PTGS2 | NM_000963 | 0.0001 | 1.43 | 2.79 | 10.93 | 1.27 |
Ssc.30833.1.S1_at | CCL3 | NM_021006 | 0.0033 | 2.36 | 3.01 | 10.67 | 1.88 |
Ssc.3706.1.S2_at | SOD2 | NM_000636 | 0.0000 | 1.10 | 2.08 | 10.52 | 1.16 |
Ssc.7864.1.A1_at | IL1RAP | NM_002182 | 0.0000 | -1.09 | 1.95 | 10.42 | 1.33 |
Ssc.16182.1.S1_at | ITPR1 | NM_002222 | 0.0018 | 6.03 | 3.97 | 10.38 | 9.08 |
Ssc.18080.1.A1_at | C8orf46 | NM_152765 | 0.0093 | -1.45 | -1.30 | -10.34 | -1.26 |
Ssc.10960.1.S1_at | CA3 | NM_005181 | 0.0003 | -1.17 | -3.30 | -10.50 | -1.39 |
Ssc.8683.1.S1_at | Â | Â | 0.0065 | -1.11 | -1.87 | -10.61 | 1.26 |
Ssc.20230.1.S1_at | Â | Â | 0.0036 | -2.74 | -1.53 | -11.60 | -1.37 |
Ssc.11065.1.A1_at | KRT17 | NM_000422 | 0.0006 | -2.06 | -2.52 | -11.93 | 1.15 |
Ssc.30225.1.A1_at | Â | Â | 0.0007 | -1.21 | -2.54 | -16.30 | -1.13 |
Ssc.5227.1.S1_at | PLN | NM_002667 | 0.0034 | 1.06 | -1.70 | -18.57 | 1.80 |
Ssc.14164.1.A1_at | Â | Â | 0.0000 | -1.34 | 1.27 | -22.76 | 1.32 |
Ssc.18150.1.A1_at | Â | Â | 0.0027 | -1.54 | -4.65 | -25.37 | -1.25 |