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Table 2 Identified activators of GRMs

From: Identifying gene regulatory modules of heat shock response in yeast

Activator identified

Module # (p-value)

Cst6

#2 (3.7 × 10-4), #3 (3.7 × 10-4), #15 (6.4 × 10-5), #18 (1 × 10-3)

Hsf1

#14 (6.8 × 10-5), #21 (3.7 × 10-4), #27 (2.4 × 10-13)

Msn2

#12 (8.5 × 10-5), #13 (4.1 × 10-5), #17 (3.3 × 10-5), #19 (8.6 × 10-4), #25 (5.8 × 10-13)

Msn4

#13 (1.2 × 10-8), #26 (<1 × 10-13)

Rlm1

#24 (1.9 × 10-4), #29 (2 × 10-10)

Yap1

#1 (9.7 × 10-6), #12 (9 × 10-9), #14 (5.3 × 10-7), #20 (3.3 × 10-7)

  1. A TF is said to be an activator of a module if the p-value for observing so many TF-gene pairs in the module each with a significant positive correlation is less than 0.001.