Algorithm name | TP | FP | FN | Jaccard similarity score |
|---|
HIMIA | 7 | 5 | 25 | 0.19 |
ReMoDiscoery | 11 | 38 | 21 | 0.16 |
GRAM | 13 | 56 | 19 | 0.15 |
MOFA | 8 | 32 | 24 | 0.13 |
SAMBA | 10 | 54 | 22 | 0.12 |
- Performance comparison was based on the Jaccard similarity score [12, 34], which scores the overlap between an algorithm's output and the list of known stress-responsive TFs. Specifically, the score is defined as TP/(TP+FP+FN) [12, 34], where TP stands for true positives, FP for false positives, and FN for false negatives. Note that the higher the Jaccard similarity score, the better the ability of an algorithm to retrieve the known stress-responsive TFs.
