Table 2 Initial identification of SNPs as detected by AutoSNP software
From: Quality assessment parameters for EST-derived SNPs from catfish
No. of Sequences in each contig | No. of contigs with SNPs | No. of total SNPs | Total Consensus Length (bp) | SNP frequency (per 100 bp) |
|---|---|---|---|---|
2 | 2,488 | 15,220 | 2,253,452 | 0.68 |
3 | 928 | 9,314 | 914,950 | 1.02 |
4 | 458 | 6,423 | 506,023 | 1.27 |
5 | 98 | 361 | 104,164 | 0.35 |
6–10 | 168 | 538 | 179,846 | 0.30 |
11–20 | 69 | 246 | 72,058 | 0.34 |
21–30 | 49 | 220 | 56,804 | 0.39 |
31–50 | 58 | 317 | 69,615 | 0.46 |
> 50 | 71 | 955 | 93,065 | 1.03 |
Total | 4,387 | 33,594 | 4,249,977 | 0.79* |