Serial No. | Gene Name | Accession Numbers of Gene Models | TIGR Locus ID | Coordinates (5'-3') | ORF Length (bp) | Protein | No. of Introns | ||
---|---|---|---|---|---|---|---|---|---|
 |  | TIGR (Release 5) |  |  |  | Length (a.a.) | Mol. Wt. (Da) | pI |  |
DICER-like | |||||||||
1 | OsDCL1a | 12003.m05835 | LOC_Os03g02970 | 1183184 – 1174351 | 5655 | 1884 | 210202.11 | 6.64 | 18 |
2 | OsDCL2a | 12003.m08967 | LOC_Os03g38740 | 21469900 – 21455783 | 4236 | 1411 | 158493.38 | 6.86 | 19 |
3 | OsDCL2b | 12009.m04723 12009.m50214 12009.m50215 | LOC_Os09g14610 | 8649185 – 8646060 | 1080 | 359 | 39984.82 | 7.27 | 2 |
4 | OsDCL3a | 12001.m12915 | LOC_Os01g68120 | 39932566 – 39922935 | 4797 | 1598 | 178239.94 | 6.65 | 26 |
5 | OsDCL3b | 12010.m06268 | LOC_Os10g34430 | 18031152 – 18042777 | 4719 | 1572 | 177717.08 | 6.7 | 25 |
6 | SHO1 | 12004.m09269 12004.m101860 12004.m78968 12004.m78969 | LOC_Os04g43050 | 25262283 – 25255247 | 3180 | 1059 | 119863.82 | 7.55 | 25 |
7 | OsDCL1c | 12005.m06289 | LOC_Os05g18850 | 10924931 – 10927291 | 957 | 318 | 34954.29 | 8.7 | 2 |
8 | OsDCL1b | 12006.m07173 | LOC_Os06g25250 | 14769389 – 14772506 | 903 | 300 | 33335.89 | 5 | 2 |
ARGONAUTES | |||||||||
1 | OsAGO1a | 12002.m09547 12002.m100310 | LOC_Os02g45070 | 27335674 – 27324616 | 3252 | 1083 | 120463 | 9.43 | 22 |
2 | OsAGO1b | 12004.m09728 12004.m101624 | LOC_Os04g47870 | 28214275 – 28207729 | 3309 | 1102 | 121632.35 | 9.86 | 22 |
3 | OsAGO1c | 12002.m10870 | LOC_Os02g58490 | 35762233 – 35755714 | 3039 | 1012 | 113158 | 9.53 | 22 |
4 | OsAGO1d | 12006.m091803 12006.m09654 | LOC_Os06g51310 | 31069900 – 31076078 | 3120 | 1039 | 115923.39 | 9.27 | 22 |
5 | OsAGO2 | 12004.m10147 | LOC_Os04g52540 | 31020218 – 31024093 | 3105 | 1038 | 111444.34 | 9.7 | 2 |
6 | OsAGO3 | 12004.m10148 | LOC_Os04g52550 | 31025382 – 31030370 | 3333 | 1110 | 122752.46 | 9.45 | 4 |
7 | OsAGO4a | 12001.m08283 12001.m150415 12001.m150416 12001.m150417 | LOC_Os01g16870 | 9633946 – 9628308 | 2718 | 905 | 100638.84 | 9.32 | 21 |
8 | OsAGO4b | 12004.m05971 12004.m35113 | LOC_Os04g06770 | 3547911 – 3542867 | 2739 | 912 | 101739.93 | 9.2 | 21 |
9 | OsAGO14 | 12007.m05358 | LOC_Os07g09020 | 4710731 – 4701446 | 3162 | 1053 | 113909.58 | 10 | 21 |
10 | OsMEL1 | 12003.m10765 | LOC_Os03g58600 | 33319166 – 33310479 | 3180 | 1059 | 117034.04 | 9.58 | 21 |
11 | OsAGO13 | 12003.m10673 | LOC_Os03g57560 | 32753781 – 32760315 | 3186 | 1061 | 121023.51 | 9.46 | 21 |
12 | OsAGO16 | 12007.m06064 | LOC_Os07g16224 | 9466401 – 9459149 | 1095 | 364 | 40509.71 | 8.07 | 10 |
13 | SHL4 | 12003.m08604 | LOC_Os03g33650 | 19198976 – 19203042 | 3168 | 1055 | 118110.77 | 9.76 | 2 |
14 | OsPNH1 | 12006.m08501 | LOC_Os06g39640 | 23539785 – 23545931 | 2925 | 974 | 107717.15 | 9.64 | 21 |
15 | OsAGO17 | 12002.m06078 | LOC_Os02g07310 | 3754861 – 3748703 | 2634 | 877 | 98923 | 8.64 | 21 |
16 | OsAGO12 | 12003.m09795 | LOC_Os03g47820 | 27110631 – 27102684 | 2934 | 977 | 107073.06 | 9.83 | 21 |
17 | OsAGO11 | 12003.m09796 | LOC_Os03g47830 | 27127103 – 27114562 | 2688 | 895 | 99845.06 | 8.94 | 20 |
18 | OsAGO18 | 12007.m07156 | LOC_Os07g28850 | 16891936 – 16898240 | 3270 | 1089 | 118034.34 | 9.57 | 20 |
19 | OsAGO15 | 12001.m08281 | LOC_Os01g16850 | 9622035-9610432 | 6711 | 2237 | 246763.92 | 8.51 | 19 |
RNA-DEPENDENT RNA POLYMERASES | |||||||||
1 | SHL2 | 12001.m09741 | LOC_Os01g34350 | 19272378 – 19267489 | 3657 | 1219 | 136533.79 | 7.11 | 1 |
2 | OsRDR2 | 12004.m08905 | LOC_Os04g39160 | 23065706 – 23070916 | 3411 | 1137 | 126924.77 | 7.56 | 3 |
3 | OsRDR4 | 12001.m07636 12001.m97449 12001.m97489 | LOC_Os01g10140 | 5321158 – 5304556 | 3621 | 1207 | 135030.19 | 7.1 | 18 |
4 | OsRDR1 | 12002.m10067 | LOC_Os02g50330 | 30727018 – 30730508 | 2223 | 741 | 84265 | 6.88 | 2 |
5 | OsRDR3 | 12001.m07635 | LOC_Os01g10130 | 5289905 – 5285242 | 1311 | 437 | 50679.98 | 6.57 | 6 |