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Table 2 Types of patterns among conserved avoided codon pairs

From: Preferred and avoided codon pairs in three domains of life

avoided pattern % among avoided pairs the effect is stronger in ORFeome (%) the effect is stronger in whole genome (%)
type 1A nnUAnn 33.8 75.7 24.3
type 2A nnGnnC 13.6 100.0 0.0
type 3A nnCGCn 8.7 77.8 22.2
type 4A (G/C)UCCnn 6.8 100.0 0.0
type 5A nnCnnA 6.3 69.2 30.8
type 6A UUCGnn 3.9 75.0 25.0
type 7A nnGGnn 3.9 100.0 0.0
type 8A mononucleotide repeats 3.9 100.0 0.0
type 9A nCAUAn 1.9 100.0 0.0
  1. The percentage of codon pairs of the corresponding pattern among all conserved avoided codon pairs is shown. For specific codon pairs of each type see [additional file 4].